update fastqc and add resources

IKIM-Essen · Oct 26, 2023 · 22a6ecb · 22a6ecb
1 parent 0162995
commit 22a6ecb
Showing 1 changed file with 4 additions and 1 deletion.
diff --git a/workflow/rules/qc.smk b/workflow/rules/qc.smk
@@ -12,8 +12,11 @@ rule fastqc:
         zip="results/{date}/qc/fastqc/{sample}_fastqc.zip",
     log:
         "logs/{date}/fastqc/{sample}.log",
+    threads: 1
+    resources:
+        mem_mb = 1024
     wrapper:
-        "v1.12.2/bio/fastqc"
+        "v2.6.0/bio/fastqc"
 
 
 # TODO Change multiqc rules back to MultiQC wrapper once v1.11 is released