remove h5netcdf dependency; fixes #48

mosartwmpy/grid/grid.py

@@ -404,11 +404,11 @@ def to_files(self, path: str) -> None:
             for df in dfs:
                 names.append(f'{df["key"]}.df.nc')
                 paths.append(f'{tmpdir}/{names[-1]}')
-                df['frame'].to_xarray().to_netcdf(paths[-1], engine='h5netcdf')
+                df['frame'].to_xarray().to_netcdf(paths[-1], engine='scipy')
             for ds in xrs:
                 names.append(f'{ds["key"]}.xr.nc')
                 paths.append(f'{tmpdir}/{names[-1]}')
-                ds['data_array'].to_netcdf(paths[-1], engine='h5netcdf')
+                ds['data_array'].to_netcdf(paths[-1], engine='scipy')
             with ZipFile(path, 'w', compression=ZIP_DEFLATED, compresslevel=9) as zip:
                 for i, filename in enumerate(paths):
                     zip.write(filename, names[i])
@@ -441,13 +441,13 @@ def from_files(path: Path) -> 'Grid':
                             setattr(grid, key, npdf[key].values)
                     if filename.endswith('df.nc'):
                         key = filename.split('.')[0]
-                        ds = xr.open_dataset(file, engine='h5netcdf')
+                        ds = xr.open_dataset(file, engine='scipy')
                         df = ds.to_dataframe()
                         setattr(grid, key, df)
                         ds.close()
                     if filename.endswith('xr.nc'):
                         key = filename.split('.')[0]
-                        ds = xr.open_dataarray(file, engine='h5netcdf').load()
+                        ds = xr.open_dataarray(file, engine='scipy').load()
                         setattr(grid, key, ds)
                         ds.close()
 

requirements.txt

@@ -1,19 +1,18 @@
 bmipy==2.0
-dask[complete]==2021.01.1
+dask[complete]==2021.5.1
 epiweeks==2.1.2
-h5netcdf==0.10.0
-matplotlib==3.3.3
+matplotlib==3.4.2
 nc-time-axis==1.2.0
-netCDF4==1.5.4
-numexpr==2.7.2
-numpy==1.19.4
-pandas==1.1.4
+netCDF4==1.5.6
+numexpr==2.7.3
+numpy==1.20.3
+pandas==1.2.4
 pathvalidate==2.3.0
-psutil==5.7.3
-pyarrow==3.0.0
+psutil==5.8.0
+pyarrow==4.0.1
 python-benedict==0.24.0
-regex==2020.11.13
+regex==2021.4.4
 requests==2.25.1
-rioxarray==0.3.1
+rioxarray==0.4.2
 tqdm==4.60.0
-xarray==0.16.1
+xarray==0.18.2