test remove pato from list

Author: hrshdhgd

README.md

@@ -14,11 +14,11 @@ Update ontologies using change language.
 
 Ontology resources that are powered by `ontobot-change-agent`:
  - [geneontology/go-ontology](https://github.com/geneontology/go-ontology/blob/6fbedcc5650a7a5363123d04ace38413434d709f/.github/workflows/new_pr.yml)
- - [monarch-initiative/mondo](https://github.com/monarch-initiative/mondo/blob/ede6a34907480f18353539fd3df9be31d9f01cdf/.github/workflows/ontobot.yaml)
- - [obophenotype/uberon](https://github.com/obophenotype/uberon/blob/e0ca62d37dfb665d5ef8f4a0c7014ae20af28531/.github/workflows/auto-pr-ontobot.yml)
- - [EnvironmentOntology/envo](https://github.com/EnvironmentOntology/envo/blob/cf0db392bc566c68cfafaa3a8e32ad218f216a8e/.github/workflows/ontobot.yml)
  - [obophenotype/cell-ontology](https://github.com/obophenotype/cell-ontology/blob/2180772b156cf79797b04cc494efc8185088428c/.github/workflows/ontobot.yml)
+ - [obophenotype/uberon](https://github.com/obophenotype/uberon/blob/e0ca62d37dfb665d5ef8f4a0c7014ae20af28531/.github/workflows/auto-pr-ontobot.yml)
  - [pato-ontology/pato](https://github.com/pato-ontology/pato/blob/f5573b017aba14714af17da975834b095000d99a/.github/workflows/onotobot.yml)
+ - [EnvironmentOntology/envo](https://github.com/EnvironmentOntology/envo/blob/cf0db392bc566c68cfafaa3a8e32ad218f216a8e/.github/workflows/ontobot.yml)
+ - [monarch-initiative/mondo](https://github.com/monarch-initiative/mondo/blob/2ad92a38d1e59c62fe45da32f437f9d0b7b09942/.github/workflows/ontobot.yaml)
 
 <!-- IMPLEMENTERS_END -->
 

src/ontobot_change_agent/api.py

@@ -2,6 +2,7 @@
 """API section."""
 
 import json
+import os
 import re
 import subprocess  # noqa S404
 from os.path import join, splitext
@@ -317,7 +318,15 @@ def get_ontobot_implementers(token: str = None):
                 new_content += f" - [{full_name}]({html_url})\n"
 
         # Get current README.md file
-        readme_path = Path(__file__).parents[2] / "README.md"
+        
+        # Check if the script is running in a GitHub Actions environment
+        if os.getenv('GITHUB_ACTIONS') == 'true':
+            # Use GITHUB_WORKSPACE environment variable to get the working directory
+            github_workspace = Path(os.getenv('GITHUB_WORKSPACE'))
+            readme_path = github_workspace / "ontobot-change-agent/README.md"
+        else:
+            # Fallback to a local path (e.g., relative to the script) if not on GitHub Actions
+            readme_path = Path(__file__).parents[2] / "README.md"
         with open(readme_path, "r") as file:
             current_readme_content = file.read()