build based on 9e6d28d

dev/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.10.5","generation_timestamp":"2024-09-10T09:24:55","documenter_version":"1.7.0"}}
+{"documenter":{"julia_version":"1.10.5","generation_timestamp":"2024-10-03T11:38:52","documenter_version":"1.7.0"}}

dev/Accuracy.html

@@ -40,4 +40,4 @@
 The pressure = 0.58613053 with M = 100000 gridpoints.</code></pre><p>We can see that the method has well-behaved second order convergence, and that with <span>$M=10^4$</span>, we get almost 6 digits of relative accuracy.</p><pre><code class="language-julia hljs">η = ρ/6*π
 p_exact = (1+2η+3η^2)/(1-η)^2-1.0
 scatter(M_array, abs.(p.-p_exact)./p_exact)
-plot!(ylabel=&quot;relative error&quot;, xlabel=&quot;M&quot;, xscale=:log, yscale=:log)</code></pre><img src="Accuracy-06d567ab.svg" alt="Example block output"/><p>In principle, these results can be extrapolated to improve the accuracy further.</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="OtherDimensions.html">« Other dimensions</a><a class="docs-footer-nextpage" href="ThermodynamicConsistency.html">Thermodynamic Consistency »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Tuesday 10 September 2024 09:24">Tuesday 10 September 2024</span>. Using Julia version 1.10.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+plot!(ylabel=&quot;relative error&quot;, xlabel=&quot;M&quot;, xscale=:log, yscale=:log)</code></pre><img src="Accuracy-ff032b4f.svg" alt="Example block output"/><p>In principle, these results can be extrapolated to improve the accuracy further.</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="OtherDimensions.html">« Other dimensions</a><a class="docs-footer-nextpage" href="ThermodynamicConsistency.html">Thermodynamic Consistency »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Thursday 3 October 2024 11:38">Thursday 3 October 2024</span>. Using Julia version 1.10.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/ExtendingClosures.html

@@ -19,7 +19,7 @@
 closure = MyHNC()
 sol = solve(system, closure)
 using Plots
-plot(sol.r, sol.gr, xlims=(0,5), xlabel=&quot;r&quot;, ylabel=&quot;g(r)&quot;)</code></pre><img src="ExtendingClosures-b31a923d.svg" alt="Example block output"/><p>which can be compared to that of <a href="SingleCompLJ.html#First-steps">First steps</a>.</p><h2 id="Mixtures"><a class="docs-heading-anchor" href="#Mixtures">Mixtures</a><a id="Mixtures-1"></a><a class="docs-heading-anchor-permalink" href="#Mixtures" title="Permalink"></a></h2><p>In the case of multicomponent systems, instead of a number the function that is overloaded should return a <code>StaticMatrix</code> containing either values for <span>$c_{ij}$</span> or <span>$b_{ij}$</span>. Since, in that case also the inputs are <code>StaticMatrix</code>, we can make use of <code>Julia</code>&#39;s broadcasting syntax to perform an closure elementwise. </p><pre><code class="language-julia hljs">import OrnsteinZernike.closure_c_from_gamma
+plot(sol.r, sol.gr, xlims=(0,5), xlabel=&quot;r&quot;, ylabel=&quot;g(r)&quot;)</code></pre><img src="ExtendingClosures-4c6c352d.svg" alt="Example block output"/><p>which can be compared to that of <a href="SingleCompLJ.html#First-steps">First steps</a>.</p><h2 id="Mixtures"><a class="docs-heading-anchor" href="#Mixtures">Mixtures</a><a id="Mixtures-1"></a><a class="docs-heading-anchor-permalink" href="#Mixtures" title="Permalink"></a></h2><p>In the case of multicomponent systems, instead of a number the function that is overloaded should return a <code>StaticMatrix</code> containing either values for <span>$c_{ij}$</span> or <span>$b_{ij}$</span>. Since, in that case also the inputs are <code>StaticMatrix</code>, we can make use of <code>Julia</code>&#39;s broadcasting syntax to perform an closure elementwise. </p><pre><code class="language-julia hljs">import OrnsteinZernike.closure_c_from_gamma
 function OrnsteinZernike.closure_c_from_gamma(::MyHNC, _, mayer_f, γ, _)
     return @. (mayer_f + 1) * exp(γ) - γ - 1 # note the @.
-end</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="ExtendingPotentials.html">« Defining your own potentials</a><a class="docs-footer-nextpage" href="API.html">API »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Tuesday 10 September 2024 09:24">Tuesday 10 September 2024</span>. Using Julia version 1.10.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+end</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="ExtendingPotentials.html">« Defining your own potentials</a><a class="docs-footer-nextpage" href="API.html">API »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Thursday 3 October 2024 11:38">Thursday 3 October 2024</span>. Using Julia version 1.10.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/ExtendingPotentials.html

@@ -10,7 +10,7 @@
 closure = HypernettedChain()
 sol = solve(system, closure)
 using Plots
-plot(sol.r, sol.gr, xlims=(0,5), xlabel=&quot;r&quot;, ylabel=&quot;g(r)&quot;)</code></pre><img src="ExtendingPotentials-0407d4d1.svg" alt="Example block output"/><h2 id="Mixtures"><a class="docs-heading-anchor" href="#Mixtures">Mixtures</a><a id="Mixtures-1"></a><a class="docs-heading-anchor-permalink" href="#Mixtures" title="Permalink"></a></h2><p>In the case of multicomponent systems, instead of a number the function should return a <code>StaticMatrix</code> from the <code>StaticArrays</code> package containing values for <span>$u_{ij}$</span>. </p><h3 id="Example-2"><a class="docs-heading-anchor" href="#Example-2">Example</a><a class="docs-heading-anchor-permalink" href="#Example-2" title="Permalink"></a></h3><p>Suppose we want to implement the same potential for the multicomponent case: <span>$u_{ij}(r) = \epsilon_{ij} (\frac{\sigma_{ij}}{r_{ij}})^6.$</span></p><p>While one could implement this in one line with broadcasting, here the function is written out fully for clarity:</p><pre><code class="language-julia hljs">using OrnsteinZernike, StaticArrays
+plot(sol.r, sol.gr, xlims=(0,5), xlabel=&quot;r&quot;, ylabel=&quot;g(r)&quot;)</code></pre><img src="ExtendingPotentials-97211219.svg" alt="Example block output"/><h2 id="Mixtures"><a class="docs-heading-anchor" href="#Mixtures">Mixtures</a><a id="Mixtures-1"></a><a class="docs-heading-anchor-permalink" href="#Mixtures" title="Permalink"></a></h2><p>In the case of multicomponent systems, instead of a number the function should return a <code>StaticMatrix</code> from the <code>StaticArrays</code> package containing values for <span>$u_{ij}$</span>. </p><h3 id="Example-2"><a class="docs-heading-anchor" href="#Example-2">Example</a><a class="docs-heading-anchor-permalink" href="#Example-2" title="Permalink"></a></h3><p>Suppose we want to implement the same potential for the multicomponent case: <span>$u_{ij}(r) = \epsilon_{ij} (\frac{\sigma_{ij}}{r_{ij}})^6.$</span></p><p>While one could implement this in one line with broadcasting, here the function is written out fully for clarity:</p><pre><code class="language-julia hljs">using OrnsteinZernike, StaticArrays
 
 function mypotential(r, p)
     # we can construct a mutable sized matrix first
@@ -36,4 +36,4 @@
 using Plots
 plot(sol.r, sol.gr[:, 1, 1], xlims=(0,5), xlabel=&quot;r&quot;, ylabel=&quot;g(r)&quot;, label=&quot;g11(r)&quot;)
 plot!(sol.r, sol.gr[:, 1, 2], xlims=(0,5), xlabel=&quot;r&quot;, ylabel=&quot;g(r)&quot;, label=&quot;g12(r)&quot;)
-plot!(sol.r, sol.gr[:, 2, 2], xlims=(0,5), xlabel=&quot;r&quot;, ylabel=&quot;g(r)&quot;, label=&quot;g22(r)&quot;)</code></pre><img src="ExtendingPotentials-d6ad5d67.svg" alt="Example block output"/></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="Theory.html">« Theory</a><a class="docs-footer-nextpage" href="ExtendingClosures.html">Defining your own closure »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Tuesday 10 September 2024 09:24">Tuesday 10 September 2024</span>. Using Julia version 1.10.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+plot!(sol.r, sol.gr[:, 2, 2], xlims=(0,5), xlabel=&quot;r&quot;, ylabel=&quot;g(r)&quot;, label=&quot;g22(r)&quot;)</code></pre><img src="ExtendingPotentials-39695392.svg" alt="Example block output"/></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="Theory.html">« Theory</a><a class="docs-footer-nextpage" href="ExtendingClosures.html">Defining your own closure »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Thursday 3 October 2024 11:38">Thursday 3 October 2024</span>. Using Julia version 1.10.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/FromPython.html

@@ -13,4 +13,4 @@
 
 plt.plot(sol.r, sol.gr)
 plt.xlim(0, 5)
-plt.show()</code></pre><p><img src="Figs/pythonfig.png" alt="image"/></p><p>See the documentation of <a href="https://pypi.org/project/juliacall/">juliacall</a> for more information on how to call Julia from Python.</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="API.html">« API</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Tuesday 10 September 2024 09:24">Tuesday 10 September 2024</span>. Using Julia version 1.10.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+plt.show()</code></pre><p><img src="Figs/pythonfig.png" alt="image"/></p><p>See the documentation of <a href="https://pypi.org/project/juliacall/">juliacall</a> for more information on how to call Julia from Python.</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="API.html">« API</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.7.0 on <span class="colophon-date" title="Thursday 3 October 2024 11:38">Thursday 3 October 2024</span>. Using Julia version 1.10.5.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>