fix(rstudio): fix permission of rstudio's user config file

rstudio/Dockerfile

@@ -7,7 +7,8 @@ LABEL maintainer="InseeFrLab <[email protected]>"
 ENV DEFAULT_USER=${USERNAME}
 ENV USERID=${UID}
 ENV GROUPID=${GID}
-ARG RSTUDIO_CONF_FILE="/etc/rstudio/rsession.conf"
+ARG RSTUDIO_SYSTEM_CONF_FILE="/etc/rstudio/rsession.conf"
+ARG RSTUDIO_USER_CONF_FILE="${HOME}/.config/rstudio/rstudio-prefs.json"
 ENV PATH="/usr/lib/rstudio-server/bin:${PATH}"
 
 USER root 
@@ -16,8 +17,11 @@ USER root
 RUN /rocker_scripts/install_rstudio.sh && \
     /rocker_scripts/install_pandoc.sh && \
     # Set default working directory for R sessions and R projects
-    echo "session-default-working-dir=${WORKSPACE_DIR}" >> ${RSTUDIO_CONF_FILE} && \
-    echo "session-default-new-project-dir=${WORKSPACE_DIR}" >> ${RSTUDIO_CONF_FILE} && \
+    echo "session-default-working-dir=${WORKSPACE_DIR}" >> ${RSTUDIO_SYSTEM_CONF_FILE} && \
+    echo "session-default-new-project-dir=${WORKSPACE_DIR}" >> ${RSTUDIO_SYSTEM_CONF_FILE} && \
+    # Initialize RStudio's user config file
+    mkdir -p "$(dirname $RSTUDIO_USER_CONF_FILE)" && \
+    echo '{}' > $RSTUDIO_USER_CONF_FILE && \
     # Fix permissions
     chown -R ${USERNAME}:${GROUPNAME} ${HOME} && \
     # Clean

scripts/onyxia-init.sh

@@ -162,11 +162,10 @@ if [[ "$DARK_MODE" == "true" ]]; then
         echo "{\"@jupyterlab/apputils-extension:themes\": {\"theme\": \"JupyterLab Dark\"}}" > ${MAMBA_DIR}/share/jupyter/lab/settings/overrides.json;
     fi 
     if command -v code-server; then
-        jq '. + {"workbench.colorTheme": "Default Dark Modern" }' ${HOME}/.local/share/code-server/User/settings.json > ${HOME}/tmp.settings.json  && mv ${HOME}/tmp.settings.json ${HOME}/.local/share/code-server/User/settings.json
+        jq '. + {"workbench.colorTheme": "Default Dark Modern"}' ${HOME}/.local/share/code-server/User/settings.json > ${HOME}/tmp.settings.json  && mv ${HOME}/tmp.settings.json ${HOME}/.local/share/code-server/User/settings.json
     fi
     if command -v rstudio-server; then
-        mkdir -p ${HOME}/.config/rstudio/
-        echo "{\"editor_theme\": \"Vibrant Ink\" }" > ${HOME}/.config/rstudio/rstudio-prefs.json
+        jq '. + {"editor_theme": "Vibrant Ink"}' ${HOME}/.config/rstudio/rstudio-prefs.json > ${HOME}/tmp.settings.json  && mv ${HOME}/tmp.settings.json ${HOME}/.config/rstudio/rstudio-prefs.json
     fi
 fi