⚡✨ init repo

CHANGELOG.md

@@ -17,5 +17,5 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Removed
 
-[unreleased]: https://github.com/IslasGECI/templater/compare/v0.1.0...HEAD
-[0.1.0]: https://github.com/IslasGECI/templater/releases/tag/v0.1.0
+[unreleased]: https://github.com/IslasGECI/geci.diversity/compare/v0.1.0...HEAD
+[0.1.0]: https://github.com/IslasGECI/geci.diversity/releases/tag/v0.1.0

DESCRIPTION

@@ -1,21 +1,23 @@
-Package: templater
-Title: Template for R projects
+Package: geci.diversity
+Title: Biological diversity R package
 Authors@R: c(
     person(given = "Ciencia de Datos",
            family = "GECI",
            role = c("aut", "cre", "cph"),
            email = "[email protected]"
            ))
 Config/testthat/edition: 3
-Description: Plantilla de Ciencia de Datos en GECI para proyectos en R
+Description: Índices de diversidad
 Encoding: UTF-8
 Imports:
     R6,
-    tidyverse
+    tidyverse,
+    reshape2,
+    vegan
 LazyData: true
 License: AGPL-3.0-or-later
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.1.2
+RoxygenNote: 7.3.2
 Suggests:
     devtools,
     roxygen2,

Dockerfile

@@ -1,2 +1,10 @@
-FROM islasgeci/base:1.0.0
+FROM rocker/tidyverse:4
 COPY . /workdir
+
+RUN apt update && apt full-upgrade --yes && apt install --yes \
+    texlive-full
+
+RUN Rscript -e "install.packages(c('covr', 'DT', 'lintr', 'styler'), repos='http://cran.rstudio.com')"
+RUN Rscript -e "install.packages(c('rshape2', 'vegan'), repos='http://cran.rstudio.com')"
+
+WORKDIR /workdir/

Makefile

@@ -69,8 +69,8 @@ setup: clean install
 install:
 	R -e "devtools::document()" && \
     R CMD build . && \
-    R CMD check templater_0.1.0.tar.gz && \
-    R CMD INSTALL templater_0.1.0.tar.gz
+    R CMD check geci.diversity_0.1.0.tar.gz && \
+    R CMD INSTALL geci.diversity_0.1.0.tar.gz
 
 tests:
 	Rscript -e "devtools::test(stop_on_failure = TRUE)"

README.md

@@ -1,18 +1,13 @@
 <a href="https://www.islas.org.mx"><img src="https://www.islas.org.mx/img/logo.svg" align="right" width="256" /></a>
 
-# Template for R projects
-[![codecov](https://codecov.io/gh/IslasGECI/templater/graph/badge.svg?token=wyxnwZypMA)](https://codecov.io/gh/IslasGECI/templater)
+# Biological diversity R package
+[![codecov](https://codecov.io/gh/IslasGECI/geci_diversity/graph/badge.svg?token=wyxnwZypMA)](https://codecov.io/gh/IslasGECI/geci_diversity)
 ![example branch
-parameter](https://github.com/IslasGECI/templater/actions/workflows/actions.yml/badge.svg)
-![licencia](https://img.shields.io/github/license/IslasGECI/templater)
-![languages](https://img.shields.io/github/languages/top/IslasGECI/templater)
-![commits](https://img.shields.io/github/commit-activity/y/IslasGECI/templater)
-![R-version](https://img.shields.io/github/r-package/v/IslasGECI/templater)
+parameter](https://github.com/IslasGECI/geci_diversity/actions/workflows/actions.yml/badge.svg)
+![licencia](https://img.shields.io/github/license/IslasGECI/geci_diversity)
+![languages](https://img.shields.io/github/languages/top/IslasGECI/geci_diversity)
+![commits](https://img.shields.io/github/commit-activity/y/IslasGECI/geci_diversity)
+![R-version](https://img.shields.io/github/r-package/v/IslasGECI/geci_diversity)
 
 ## Step to use
-- Rename links in `README`.
-- Rename image name in `docker-compose.yml`.
-- Rename package name in `DESCRIPTION`.
 - Rename image names in `actions.yml`.
-- Rename package name on install recipe in `Makefile`.
-- Rename package name in `teststhat.R`, `coverage.R` and `test_nothing.R`

docker-compose.yml

@@ -1,10 +1,9 @@
-version: "3.1"
 services:
   islasgeci:
     build:
       context: .
       dockerfile: Dockerfile
-    image: islasgeci/templater:latest
+    image: islasgeci/geci_diversity:latest
     command: bash
     volumes:
       - $PWD:/workdir

tests/testthat.R

@@ -1,3 +1,3 @@
 library(testthat)
-library(templater)
-test_check("templater")
+library(geci.diversity)
+test_check("geci.diversity")

tests/testthat/test_nothing.R

@@ -9,7 +9,7 @@ describe("Test all is ready", {
 describe("Get version of the module", {
   it("The version is 0.1.0", {
     expected_version <- c("0.1.0")
-    obtained_version <- packageVersion("templater")
+    obtained_version <- packageVersion("geci.diversity")
     version_are_equal <- expected_version == obtained_version
     expect_true(version_are_equal)
   })