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Useful-functions
Useful-functions PublicFunctions I find useful (some stolen from bobFunctions by @bobverity)
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EpiGenR
EpiGenR PublicForked from lucymli/EpiGenR
Inference from both epidemiological and genetic data. Functions generate input files for EpiGenMCMC and to visualise output.
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multitree_illustrative
multitree_illustrative PublicIllustrating methods used in: Routledge, Isobel, et al. "Estimating spatiotemporally varying malaria reproduction numbers in a near elimination setting." Nature communications 9.1 (2018): 2476.
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estimates-Rc-China
estimates-Rc-China PublicCode and data used in "Tracking progress towards malaria elimination in China: estimates of reproduction numbers and their spatiotemporal variation" ( accessible at: https://www.biorxiv.org/content…
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spatial_rcs
spatial_rcs PublicCode associated with "Inference of malaria reproduction numbers in three elimination settings by combining temporal data and distance metrics" by Routledge et al.
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