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  1. Useful-functions Useful-functions Public

    Functions I find useful (some stolen from bobFunctions by @bobverity)

    R 1

  2. EpiGenR EpiGenR Public

    Forked from lucymli/EpiGenR

    Inference from both epidemiological and genetic data. Functions generate input files for EpiGenMCMC and to visualise output.

    R

  3. multitree_illustrative multitree_illustrative Public

    Illustrating methods used in: Routledge, Isobel, et al. "Estimating spatiotemporally varying malaria reproduction numbers in a near elimination setting." Nature communications 9.1 (2018): 2476.

    R 3

  4. estimates-Rc-China estimates-Rc-China Public

    Code and data used in "Tracking progress towards malaria elimination in China: estimates of reproduction numbers and their spatiotemporal variation" ( accessible at: https://www.biorxiv.org/content…

    R

  5. spatial_rcs spatial_rcs Public

    Code associated with "Inference of malaria reproduction numbers in three elimination settings by combining temporal data and distance metrics" by Routledge et al.

    R 3

  6. rcpp_intro rcpp_intro Public

    Forked from m-murphy/rcpp_intro

    A Brief Introduction to Rcpp

    C++