Move import, update setup/README

Moved an import statement in predict_loading_concentration:main from main() to the top.
Edited setup.py to call the new predict_loading_concentration.
Iterated version.
Updated REAMDE to show dependency installation instructions.

README.md

@@ -4,12 +4,11 @@ This package is a repository of tools used by the DIVA DNA Seq team at the Joint
 
 ## Installation 
 
-The tool can be installed using pip with 
-
-```bash
-pip install diva_dna_seq
+The dependencies of this tool can be installed with:
+```
+pip install -r requirements.txt
 ```
 
 ## Use
 
-This tool can then be used either in a Jupyter notebook or on the command line. A bioanalyzer ladder file and result file are needed. The tool generates a plot that relates library loading concentration for your library to 
+This tool can then be used either in a Jupyter notebook or on the command line. A bioanalyzer ladder file and result file are needed. The tool generates a plot that relates library loading concentration for your library to 

predict_loading_concentration.py

@@ -7,11 +7,11 @@ def warn(*args, **kwargs):
 from diva_seq_opt import utility
 import argparse
 import pickle
+import matplotlib as mpl
 
 
 def main():
 	#Allow Matplotlib to be used on commandline
-	import matplotlib as mpl
 	mpl.use('Agg')
 
 	#Handle inputs

setup.py

@@ -1,19 +1,19 @@
 from setuptools import setup
 
 setup(name='diva_seq_opt',
-      version='0.0.3',
+      version='0.0.4',
       description='Predict the library loading concentration to use for mi-seq runs based on bioanalyzer data.',
       url='https://github.com/JBEI/library_loading_concentration_prediction',
       author='Zak Costello',
       author_email='[email protected]',
       license='BSD',
       packages=['diva_seq_opt'],      
       entry_points = {
-        'console_scripts': ['predict_loading_concentration=diva_seq_opt.predict_loading_concentration:main'],
+        'console_scripts': ['predict_loading_concentration=predict_loading_concentration:main'],
       },
       install_requires=[
           'pandas','numpy','scipy','matplotlib',
           'peakutils','sklearn','tpot'
       ],
       include_package_data=True,
-      zip_safe=False)
+      zip_safe=False)