fit error in DHARMa vignette example

James-Thorson-NOAA · Oct 18, 2024 · 7ee14a5 · 7ee14a5
1 parent aa615fc
commit 7ee14a5
Show file tree

Hide file tree

Showing 2 changed files with 1 addition and 2 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -30,7 +30,6 @@ Suggests:
     MARSS,
     ggplot2,
     ggpubr,
-    ggraph,
     grid,
     vars,
     testthat,

diff --git a/vignettes/vignette.Rmd b/vignettes/vignette.Rmd
@@ -66,7 +66,7 @@ We can also calculate leave-one-out residuals and display them using DHARMa:
 # sample-based quantile residuals
 samples = loo_residuals(fit, what="samples", track_progress=FALSE)
 which_use = which(!is.na(data))
-fitResp = loo_residuals( fit, what="loo", track_progress=FALSE)
+fitResp = loo_residuals( fit, what="loo", track_progress=FALSE)[,'est']
 simResp = apply(samples, MARGIN=3, FUN=as.vector)[which_use,]
 
 # Build and display DHARMa object
-Original file line number
+Diff line change
@@ Expand Up / @@ -30,7 +30,6 @@ Suggests: @@
         MARSS,
         ggplot2,
         ggpubr,
-        ggraph,
         grid,
         vars,
         testthat,
@@ Expand Down @@