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small fixes in docs
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James-Thorson-NOAA committed Apr 1, 2024
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -21,7 +21,7 @@ The model has several advantages:
* It is rapidly fitted as a Gaussian Markov random field (GMRF) in a Generalized Linear Mixed Model (GLMM), with speed and asymptotics associated with each
* It allows granular control over the number of parameters (and restrictions on parameters) used to structure the covariance among variables and over time,

_phylosem_ is specifically intended as a minimal implementation, and uses standard packages to simplify input/output formatting:
_dsem_ is specifically intended as a minimal implementation, and uses standard packages to simplify input/output formatting:

* Input: time-series defined using class _ts_, with `NA` for missing values
* Input: structural trade-offs specified using syntax defined by package _sem_
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2 changes: 1 addition & 1 deletion vignettes/dynamic_factor_analysis.Rmd
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Expand Up @@ -140,7 +140,7 @@ These estimated states follow the data more closely and have smaller estimated c

## Reduced-rank factor model with measurement errors

Next, we can specify three factors factors while eliminating additional process error and estimating measurement errors. This requires us to switch to `gmrf_parameterization = "projection"`, so that we can fit a rank-deficient Gaussian Markov random field:
Next, we can specify two factors factors while eliminating additional process error and estimating measurement errors. This requires us to switch to `gmrf_parameterization = "projection"`, so that we can fit a rank-deficient Gaussian Markov random field:

```{r, echo=TRUE, message=FALSE, fig.width=7, fig.height=7}
# Add factors to data
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