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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

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  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 75 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 47 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 33 14

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 26 3

  6. SharkViewer SharkViewer Public

    SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.

    JavaScript 24 11

Repositories

Showing 10 of 266 repositories
  • EM_recon_pipeline Public

    Pipeline scripts and tools for reconstructing Electron Microscopy volumes.

    JaneliaSciComp/EM_recon_pipeline’s past year of commit activity
    Python 4 BSD-3-Clause 2 0 3 Updated Nov 25, 2024
  • bigstream Public

    Tools for distributed alignment of massive images

    JaneliaSciComp/bigstream’s past year of commit activity
    Jupyter Notebook 75 BSD-3-Clause 21 11 2 Updated Nov 24, 2024
  • G4_Display_Tools Public

    Collection of tools for the G4 LED arena displays.

    JaneliaSciComp/G4_Display_Tools’s past year of commit activity
    MATLAB 2 CC-BY-4.0 3 10 0 Updated Nov 23, 2024
  • videoAnnotation Public
    JaneliaSciComp/videoAnnotation’s past year of commit activity
    JavaScript 0 BSD-3-Clause 0 0 0 Updated Nov 22, 2024
  • videoAnnotation_backend Public
    JaneliaSciComp/videoAnnotation_backend’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Nov 22, 2024
  • dis-utilities Public

    Utilities for Data and Information Services

    JaneliaSciComp/dis-utilities’s past year of commit activity
    JavaScript 0 BSD-3-Clause 1 22 1 Updated Nov 22, 2024
  • janelia-unity-toolkit Public

    Packages for the Unity game engine, emphasizing animal studies in VR.

    JaneliaSciComp/janelia-unity-toolkit’s past year of commit activity
    C# 16 11 5 2 Updated Nov 22, 2024
  • neuronbridge-python Public

    Python API for NeuronBridge

    JaneliaSciComp/neuronbridge-python’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Nov 21, 2024
  • JaneliaDataStandards Public

    A pilot experiment to dissminate information about Janelia's biomaging data formats.

    JaneliaSciComp/JaneliaDataStandards’s past year of commit activity
    HTML 10 BSD-3-Clause 2 2 3 Updated Nov 21, 2024
  • neuronbridge-precompute Public

    Utilities for indexing and transferring of NeuronBridge-related files

    JaneliaSciComp/neuronbridge-precompute’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Nov 21, 2024
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