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fix matplotlib reference and add numpy one
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Y0dler committed Aug 22, 2024
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24 changes: 23 additions & 1 deletion paper/literature.bib
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Expand Up @@ -45,7 +45,7 @@ @article{matplotlib
}

@softmisc{matplotlibzenodo,
author = {The Matplotlib Development Team},
author = {{The Matplotlib Development Team}},
title = {Matplotlib: Visualization with Python},
keywords = {software},
month = may,
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year = {2019},
type = {Journal Article}
}

@article{harris2020array,
title = {Array programming with {NumPy}},
author = {Harris, C. R. and Millman, K. J. and
{van der Walt}, S. J. and Gommers, R. and Virtanen, P. and
Cournapeau, D. and Wieser, E. and Taylor, J. and
Berg, S. and Smith, N. J. and Kern, R. and Picus, M.
and Hoyer, S. and {van Kerkwijk}, M. H. and
Brett, M. and Haldane, M. and del R{\'{i}}o, J. F. and Wiebe, M. and Peterson, P. and
G{\'{e}}rard-Marchant, P. and Sheppard, K. and Reddy, T. and
Weckesser, W. and Abbasi, H. and Gohlke, C. and
Oliphant, T. E.},
year = {2020},
month = sep,
journal = {Nature},
volume = {585},
number = {7825},
pages = {357--362},
doi = {10.1038/s41586-020-2649-2},
publisher = {Springer Science and Business Media {LLC}},
url = {https://doi.org/10.1038/s41586-020-2649-2}
}
2 changes: 1 addition & 1 deletion paper/paper.md
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Expand Up @@ -73,7 +73,7 @@ Since the inference data is stored alongside graphs and report sheets, users may
Several stages of validation were employed to prove the suitability of $\texttt{PeakPerformance}$ for chromatographic peak data analysis.
The goals were to showcase the efficacy of $\texttt{PeakPerformance}$ utilizing noisy synthetic data, to investigate cases where a peak could reasonably be fit with either of the single peak models, and finally to use experimental data to compare results obtained with $\texttt{PeakPerformance}$ to those from the commercial vendor software Sciex MultiQuant.

For the first test, 500 random data sets were generated with the NumPy random module by drawing from the normal distributions detailed in Table 1 except for the mean parameter which was held constant at a value of 6.
For the first test, 500 random data sets were generated with the NumPy random module [@harris2020array] by drawing from the normal distributions detailed in Table 1 except for the mean parameter which was held constant at a value of 6.
Subsequently, normally distributed random noise ($\mathcal{N}(0, 0.6)$ or $\mathcal{N}(0, 1.2)$ for data sets with the tag "higher noise") was added to each data point.
The amount of data points per time was chosen based on an LC-MS/MS method routinely utilized by the authors and accordingly set to one data point per 1.8 s.

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