Merge branch 'main' into main

.buildkite/pipeline.yml

@@ -1,8 +1,9 @@
 steps:
   - label: ":julia: Run tests"
+    key: "test"
     plugins:
       - JuliaCI/julia#v1:
-          version: "1.8"
+          version: "1"
       - JuliaCI/julia-test#v1:
           coverage: false
     agents:
@@ -12,10 +13,11 @@ steps:
     timeout_in_minutes: 30
 
   - label: ":julia: Run benchmarks"
+    key: "benchmark"
     command: "julia --project=benchmark benchmark/runbenchmarks.jl"
     plugins:
       - JuliaCI/julia#v1:
-          version: "1.8"
+          version: "1"
     agents:
       os: "linux"
       queue: "juliaecosystem"

.devcontainer/devcontainer.json

@@ -1,16 +1,21 @@
 {
-	"name": "TaylorDiff.jl Development Container",
-	"image": "ghcr.io/julia-vscode/julia-devcontainer",
-	"customizations": {
-		"vscode": {
-			"extensions": [
-				"julialang.language-julia",
-				"bungcip.better-toml"
-			]
-		}
-	},
-	"postCreateCommand": "julia -e 'using Pkg; Pkg.add([\"Revise\", \"TestEnv\", \"JuliaFormatter\", \"Cthulhu\"])'",
-	"hostRequirements": {
-		"cpus": 4
-	}
+  "name": "TaylorDiff.jl Development Container",
+  "image": "mcr.microsoft.com/devcontainers/base:jammy",
+  "customizations": {
+    "vscode": {
+      "extensions": [
+        "julialang.language-julia",
+        "tamasfe.even-better-toml"
+      ]
+    }
+  },
+  "features": {
+    "ghcr.io/julialang/devcontainer-features/julia:1": {
+      "channel": "release"
+    }
+  },
+  "postCreateCommand": "julia .devcontainer/postcreate.jl",
+  "hostRequirements": {
+    "cpus": 4
+  }
 }

.devcontainer/postcreate.jl

@@ -0,0 +1,5 @@
+using Pkg
+Pkg.add(["Revise", "TestEnv", "JuliaFormatter"])
+
+Pkg.activate(".")
+Pkg.instantiate()

.github/dependabot.yml

@@ -0,0 +1,7 @@
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "weekly"

.github/workflows/Documentation.yml

@@ -17,8 +17,8 @@ jobs:
     permissions:
       contents: write
     steps:
-      - uses: actions/checkout@v2
-      - uses: julia-actions/setup-julia@v1
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
         with:
           version: '1'
       - uses: julia-actions/julia-buildpkg@v1

.github/workflows/FormatCheck.yml

@@ -11,8 +11,8 @@ jobs:
   build:
     runs-on: ubuntu-latest
     steps:
-      - uses: julia-actions/setup-julia@v1
-      - uses: actions/checkout@v2
+      - uses: julia-actions/setup-julia@v2
+      - uses: actions/checkout@v4
       - name: Install JuliaFormatter and format
         run: |
           julia  -e 'using Pkg; Pkg.add(PackageSpec(name="JuliaFormatter"))'

.github/workflows/Test.yml

@@ -18,23 +18,22 @@ jobs:
       fail-fast: false
       matrix:
         version:
-          - '1.6'
-          - '1.8'
+          - '1'
         os:
           - ubuntu-latest
         arch:
           - x64
     steps:
-      - uses: actions/checkout@v2
-      - uses: julia-actions/setup-julia@v1
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
         with:
           version: ${{ matrix.version }}
           arch: ${{ matrix.arch }}
-      - uses: julia-actions/cache@v1
+      - uses: julia-actions/cache@v2
       - uses: julia-actions/julia-buildpkg@v1
       - uses: julia-actions/julia-runtest@v1
       - uses: julia-actions/julia-processcoverage@v1
-      - uses: codecov/codecov-action@v2
+      - uses: codecov/codecov-action@v4
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
           files: lcov.info

Project.toml

@@ -1,19 +1,31 @@
 name = "TaylorDiff"
 uuid = "b36ab563-344f-407b-a36a-4f200bebf99c"
 authors = ["Songchen Tan <[email protected]>"]
-version = "0.2.1"
+version = "0.2.4"
 
 [deps]
 ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2"
 ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
 ChainRulesOverloadGeneration = "f51149dc-2911-5acf-81fc-2076a2a81d4f"
 SymbolicUtils = "d1185830-fcd6-423d-90d6-eec64667417b"
+Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7"
 Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
 
+[weakdeps]
+NNlib = "872c559c-99b0-510c-b3b7-b6c96a88d5cd"
+SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b"
+
+[extensions]
+TaylorDiffNNlibExt = ["NNlib"]
+TaylorDiffSFExt = ["SpecialFunctions"]
+
 [compat]
 ChainRules = "1"
 ChainRulesCore = "1"
 ChainRulesOverloadGeneration = "0.1"
-SymbolicUtils = "1"
+NNlib = "0.9"
+SpecialFunctions = "2"
+SymbolicUtils = "2, 3"
+Symbolics = "5.30.1, 6"
 Zygote = "0.6.55"
 julia = "1.6"

README.md

@@ -6,9 +6,9 @@
   <a href="https://juliadiff.org/TaylorDiff.jl/stable/"><img src="https://img.shields.io/badge/docs-stable-blue.svg" alt="Stable" /></a>
   <a href="https://juliadiff.org/TaylorDiff.jl/dev/"><img src="https://img.shields.io/badge/docs-dev-blue.svg" alt="Dev" /></a>
   <br />
-  <a href="https://github.com/JuliaDiff/TaylorDiff.jl/actions/workflows/Test.yml?query=branch%3Amain"><img src="https://github.com/JuliaDiff/TaylorDiff.jl/actions/workflows/Test.yml/badge.svg?branch=main" alt="Build Status" /></a>
-  <a href="https://codecov.io/gh/JuliaDiff/TaylorDiff.jl"><img src="https://codecov.io/gh/JuliaDiff/TaylorDiff.jl/branch/main/graph/badge.svg?token=5KYP7K71VQ"/></a>
-  <a href="https://benchmark.tansongchen.com/TaylorDiff.jl"><img src="https://github.com/JuliaDiff/TaylorDiff.jl/actions/workflows/Benchmark.yml/badge.svg?branch=main" alt="Benchmark Status" /></a>
+  <a href="https://github.com/JuliaDiff/TaylorDiff.jl/actions/workflows/Test.yml?query=branch%3Amain"><img src="https://img.shields.io/github/actions/workflow/status/JuliaDiff/TaylorDiff.jl/Test.yml?branch=main&label=test" alt="Build Status" /></a>
+  <a href="https://codecov.io/gh/JuliaDiff/TaylorDiff.jl"><img src="https://img.shields.io/codecov/c/gh/JuliaDiff/TaylorDiff.jl/main?token=5KYP7K71VQ"/></a>
+  <a href="https://benchmark.tansongchen.com/TaylorDiff.jl"><img src="https://img.shields.io/buildkite/2c801728055463e7c8baeeb3cc187b964587235a49b3ed39ab/main.svg?label=benchmark" alt="Benchmark Status" /></a>
   <br />
   <a href="https://github.com/SciML/ColPrac"><img src="https://img.shields.io/badge/contributor's%20guide-ColPrac-blueviolet" alt="ColPrac: Contributor's Guide on Collaborative Practices for Community Packages" /></a>
   <a href="https://github.com/SciML/SciMLStyle"><img src="https://img.shields.io/badge/code%20style-SciML-blueviolet" alt="SciML Code Style" /></a>
@@ -56,7 +56,7 @@ Please see our [documentation](https://juliadiff.org/TaylorDiff.jl) for more det
 
 - [TaylorSeries.jl](https://github.com/JuliaDiff/TaylorSeries.jl): a systematic treatment of Taylor polynomials in one and several variables, but its mutating and scalar code isn't great for speed and composability with other packages
 - [ForwardDiff.jl](https://github.com/JuliaDiff/ForwardDiff.jl): well-established and robust operator-overloading based forward-mode AD, where higher-order derivatives can be achieved by nesting first-order derivatives
-- [Diffractor.jl](https://github.com/PumasAI/SimpleChains.jl): next-generation source-code transformation based forward-mode and reverse-mode AD, designed with support for higher-order derivatives in mind; but the higher-order functionality is currently only a proof-of-concept
+- [Diffractor.jl](https://github.com/JuliaDiff/Diffractor.jl): next-generation source-code transformation based forward-mode and reverse-mode AD, designed with support for higher-order derivatives in mind; but the higher-order functionality is currently only a proof-of-concept
 - [`jax.jet`](https://jax.readthedocs.io/en/latest/jax.experimental.jet.html): an experimental (and unmaintained) implementation of Taylor-mode automatic differentiation in JAX, sharing the same underlying algorithm with this project
 
 ## Citation