fix runtest

GNNGraphs/src/query.jl

@@ -349,7 +349,7 @@ function _degree((s, t)::Tuple, T::Type, dir::Symbol, edge_weight::Nothing, num_
 end
 
 function _degree((s, t)::Tuple, T::Type, dir::Symbol, edge_weight::AbstractVector, num_nodes::Int)
-    degs = fill!(similar(s, T, num_nodes), 0)
+    degs = zeros_like(s, T, num_nodes)
 
     if dir ∈ [:out, :both]
         degs = degs .+ NNlib.scatter(+, edge_weight, s, dstsize = (num_nodes,))

GNNGraphs/test/runtests.jl

@@ -36,7 +36,7 @@ tests = [
     "sampling",
     "gnnheterograph",
     "temporalsnapshotsgnngraph",
-    "ext/SimpleWeightedGraphs/SimpleWeightedGraphs"
+    "ext/SimpleWeightedGraphs"
 ]
 
 !CUDA.functional() && @warn("CUDA unavailable, not testing GPU support")
@@ -49,7 +49,6 @@ for graph_type in (:coo, :dense, :sparse)
     # global TEST_GPU = false
 
     @testset "$t" for t in tests
-        t == "GNNGraphs/sampling" && GRAPH_T != :coo && continue
         include("$t.jl")
     end
 end

GNNGraphs/test/sampling.jl

@@ -1,46 +1,48 @@
-@testset "sample_neighbors" begin
-    # replace = false
-    dir = :in
-    nodes = 2:3
-    g = rand_graph(10, 40, bidirected = false, graph_type = GRAPH_T)
-    sg = sample_neighbors(g, nodes; dir)
-    @test sg.num_nodes == 10
-    @test sg.num_edges == sum(degree(g, i; dir) for i in nodes)
-    @test size(sg.edata.EID) == (sg.num_edges,)
-    @test length(union(sg.edata.EID)) == length(sg.edata.EID)
-    adjlist = adjacency_list(g; dir)
-    s, t = edge_index(sg)
-    @test all(t .∈ Ref(nodes))
-    for i in nodes
-        @test sort(neighbors(sg, i; dir)) == sort(neighbors(g, i; dir))
-    end
+if GRAPH_T == :coo
+    @testset "sample_neighbors" begin
+        # replace = false
+        dir = :in
+        nodes = 2:3
+        g = rand_graph(10, 40, bidirected = false, graph_type = GRAPH_T)
+        sg = sample_neighbors(g, nodes; dir)
+        @test sg.num_nodes == 10
+        @test sg.num_edges == sum(degree(g, i; dir) for i in nodes)
+        @test size(sg.edata.EID) == (sg.num_edges,)
+        @test length(union(sg.edata.EID)) == length(sg.edata.EID)
+        adjlist = adjacency_list(g; dir)
+        s, t = edge_index(sg)
+        @test all(t .∈ Ref(nodes))
+        for i in nodes
+            @test sort(neighbors(sg, i; dir)) == sort(neighbors(g, i; dir))
+        end
 
-    # replace = true
-    dir = :out
-    nodes = 2:3
-    K = 2
-    g = rand_graph(10, 40, bidirected = false, graph_type = GRAPH_T)
-    sg = sample_neighbors(g, nodes, K; dir, replace = true)
-    @test sg.num_nodes == 10
-    @test sg.num_edges == sum(K for i in nodes)
-    @test size(sg.edata.EID) == (sg.num_edges,)
-    adjlist = adjacency_list(g; dir)
-    s, t = edge_index(sg)
-    @test all(s .∈ Ref(nodes))
-    for i in nodes
-        @test issubset(neighbors(sg, i; dir), adjlist[i])
-    end
+        # replace = true
+        dir = :out
+        nodes = 2:3
+        K = 2
+        g = rand_graph(10, 40, bidirected = false, graph_type = GRAPH_T)
+        sg = sample_neighbors(g, nodes, K; dir, replace = true)
+        @test sg.num_nodes == 10
+        @test sg.num_edges == sum(K for i in nodes)
+        @test size(sg.edata.EID) == (sg.num_edges,)
+        adjlist = adjacency_list(g; dir)
+        s, t = edge_index(sg)
+        @test all(s .∈ Ref(nodes))
+        for i in nodes
+            @test issubset(neighbors(sg, i; dir), adjlist[i])
+        end
 
-    # dropnodes = true
-    dir = :in
-    nodes = 2:3
-    g = rand_graph(10, 40, bidirected = false, graph_type = GRAPH_T)
-    g = GNNGraph(g, ndata = (x1 = rand(10),), edata = (e1 = rand(40),))
-    sg = sample_neighbors(g, nodes; dir, dropnodes = true)
-    @test sg.num_edges == sum(degree(g, i; dir) for i in nodes)
-    @test size(sg.edata.EID) == (sg.num_edges,)
-    @test size(sg.ndata.NID) == (sg.num_nodes,)
-    @test sg.edata.e1 == g.edata.e1[sg.edata.EID]
-    @test sg.ndata.x1 == g.ndata.x1[sg.ndata.NID]
-    @test length(union(sg.ndata.NID)) == length(sg.ndata.NID)
-end
+        # dropnodes = true
+        dir = :in
+        nodes = 2:3
+        g = rand_graph(10, 40, bidirected = false, graph_type = GRAPH_T)
+        g = GNNGraph(g, ndata = (x1 = rand(10),), edata = (e1 = rand(40),))
+        sg = sample_neighbors(g, nodes; dir, dropnodes = true)
+        @test sg.num_edges == sum(degree(g, i; dir) for i in nodes)
+        @test size(sg.edata.EID) == (sg.num_edges,)
+        @test size(sg.ndata.NID) == (sg.num_nodes,)
+        @test sg.edata.e1 == g.edata.e1[sg.edata.EID]
+        @test sg.ndata.x1 == g.ndata.x1[sg.ndata.NID]
+        @test length(union(sg.ndata.NID)) == length(sg.ndata.NID)
+    end
+end