Add common simulation functions #37
Workflow file for this run
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# Borrowed from VaMPy | |
# Original Workflow File: https://github.com/KVSlab/VaMPy/blob/master/.github/workflows/check_and_test_package.yml | |
# Description: Check and test the code of FSIPy | |
name: CI | |
on: | |
push: | |
# The CI is executed on every push on every branch | |
branches: | |
- master | |
pull_request: | |
# The CI is executed on every pull request to the main branch | |
branches: | |
- master | |
schedule: | |
# The CI is executed every day at 4am | |
- cron: "0 4 * * *" | |
env: | |
CACHE_NUMBER: 0 # Increase to reset cache | |
jobs: | |
check-code: | |
name: Check code | |
runs-on: ubuntu-latest | |
continue-on-error: true | |
steps: | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: '3.10' | |
- name: Upgrade pip and setuptools | |
run: python3 -m pip install pip setuptools --upgrade | |
- name: Checkout code | |
uses: actions/checkout@v3 | |
- name: Install types-paramiko | |
run: python3 -m pip install types-paramiko | |
- name: Install FSIPy | |
run: python3 -m pip install .[test] | |
- name: Check code with Flake8 | |
run: python3 -m flake8 | |
- name: Check code with mypy | |
run: python3 -m mypy | |
test-code: | |
needs: check-code | |
strategy: | |
matrix: | |
include: | |
- os: ubuntu-latest | |
label: linux-64 | |
prefix: /usr/share/miniconda3/envs/fsipy | |
- os: macos-latest | |
label: osx-64 | |
prefix: /Users/runner/miniconda3/envs/fsipy | |
name: Test FSIPy on ${{ matrix.label }} | |
runs-on: ${{ matrix.os }} | |
# https://github.com/marketplace/actions/setup-miniconda#use-a-default-shell | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: '3.10' | |
- name: Checkout code | |
uses: actions/checkout@v3 | |
- name: Upgrade pip and setuptools | |
run: | | |
python3 -m pip install pip setuptools --upgrade | |
# See: https://github.com/marketplace/actions/setup-miniconda | |
- name: Setup Mambaforge | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
miniforge-variant: Mambaforge | |
miniforge-version: latest | |
channels: conda-forge | |
activate-environment: fsipy | |
use-mamba: true | |
- name: Set cache date | |
run: echo "DATE=$(date +'%Y%m%d')" >> $GITHUB_ENV | |
- uses: actions/cache@v2 | |
with: | |
path: ${{ matrix.prefix }} | |
key: ${{ matrix.label }}-conda-${{ hashFiles('environment.yml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
id: cache | |
- name: Update environment | |
run: mamba env update -n fsipy -f environment.yml | |
if: steps.cache.outputs.cache-hit != 'true' | |
- name: Install FSIPy | |
run: python3 -m pip install .[test] | |
- name: Run tests | |
run: python3 -m pytest tests | |
# FIXME: Uncomment these lines later when we have decided on a package name | |
#- name: Upload coverage report to codecov | |
# if: matrix.os == 'ubuntu-latest' | |
# uses: codecov/codecov-action@v3 | |
# with: | |
# token: ${{ secrets.CODECOV_TOKEN }} | |
# files: ./coverage.xml | |
# fail_ci_if_error: false | |
# verbose: true | |
# Original workflow authored by Henrik Kjeldsberg | |
# Source Repository: https://github.com/KVSlab/VaMPy/ |