morphMan CI #64
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name: morphMan CI | |
on: | |
push: | |
branches: | |
- master | |
pull_request: | |
branches: | |
- master | |
schedule: | |
- cron: '0 8 * * *' | |
env: | |
CACHE_NUMBER: 2 # Increase to reset cache | |
jobs: | |
check-code: | |
name: Check code | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: '3.10' | |
- name: Install dependencies and project | |
run: | | |
python -m pip install --upgrade pip setuptools | |
python -m pip install '.[test]' | |
- name: Run linting and checks | |
run: | | |
bash linting.sh | |
test-code: | |
needs: check-code | |
strategy: | |
matrix: | |
include: | |
- os: ubuntu-latest | |
label: linux-64 | |
prefix: /usr/share/miniconda3/envs/morphman-env | |
# Workaround for arm64: https://github.com/vmtk/vmtk/issues/452#issuecomment-1489829429 | |
- os: macos-13 | |
label: osx-64 # No support for arm64 | |
prefix: /Users/runner/miniconda3/envs/morphman-env | |
- os: windows-latest | |
label: win-64 | |
prefix: C:/Miniconda3/envs/morphman-env | |
name: Test morphMan on ${{ matrix.os }} | |
runs-on: ${{ matrix.os }} | |
defaults: | |
run: # https://github.com/marketplace/actions/setup-miniconda#use-a-default-shell | |
shell: bash -el {0} | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-file: environment.yml | |
init-shell: bash | |
cache-environment: true | |
- uses: actions/cache@v3 | |
with: | |
path: ${{ matrix.prefix }} | |
key: ${{ matrix.label }}-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }} | |
restore-keys: ${{ matrix.label }}-${{ env.CACHE_NUMBER }}- | |
- name: Install morphMan | |
run: | | |
python -m pip install '.[test]' | |
- name: Run tests | |
run: | | |
python -m pytest tests | |
- name: Upload coverage report to Codecov | |
if: matrix.os == 'ubuntu-latest' | |
uses: codecov/codecov-action@v3 | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
files: ./coverage.xml | |
fail_ci_if_error: false | |
verbose: true |