Updated install instructions

.travis.yml

@@ -27,3 +27,11 @@ install:
   - pip install git+git://github.com/pysam-developers/[email protected]
   - make cython-build
 script: "make tests"
+deploy:
+  provider: pypi
+  user: karchinlab
+  password:
+    secure: my_secure_password
+  on:
+    tags: true
+    branch: master

README.rst

@@ -47,7 +47,7 @@ To install the package into python you can use `pip`. If you are installing to a
 
 .. code-block:: bash
 
-    $ pip install https://github.com/KarchinLab/probabilistic2020/archive/v1.0.0.tar.gz 
+    $ pip install probabilistic2020
 
 The scripts for Probabilstic 20/20 can then be found in `Your_Python_Root_Dir/bin`. You can
 check the installation with the following:

doc/installation.rst

@@ -15,7 +15,7 @@ To install the package into python you can use `pip`. If you are installing to a
 
 .. code-block:: bash
 
-    $ pip install https://github.com/KarchinLab/probabilistic2020/archive/v1.0.0.tar.gz 
+    $ pip install probabilistic2020
 
 The scripts for Probabilstic 20/20 can then be found in `Your_Python_Root_Dir/bin`. You can
 check the installation with the following:

setup.py

@@ -62,6 +62,7 @@
           author_email=EMAIL,
           url=URL,
           packages=PACKAGES,
+          license='JHU Academic Software License Agreement (free for non-commercial use)',
           install_requires=['numpy', 'scipy', 'pandas', 'pysam'],
           package_data={
               SRC_DIR+'.console': ['*.R']