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Vp tree hash index#321

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wphicks wants to merge 18 commits intoKitware:masterKitware/SMQTK:masterfrom wphicks:vp-tree-integrationwphicks/SMQTK:vp-tree-integrationCopy head branch name to clipboard

+2,179-46

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Commits on Nov 2, 2017

• Add VpTree creation and knn functions for vp, vps, vpsb trees

  

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  7eba5e2

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• Fix incorrect imports

  

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  d7fb143

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• PEP8 cleanup for VP tree source files

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  0c01bdb

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• Handle single item partitioning in vpsb trees

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• Integrate vp trees as hash index

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• Allow selection of VP tree type

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  941acdf

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• Optimize bit vector/integer conversions

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  2c06f1a

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• Allow construction of VP trees from arrays

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  f448209

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• Add tests for VP tree array conversions

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  ed0570c

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• Add serialization methods for VP tree hash index

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  043915e

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• Add tests for VP tree hash index

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  1752a5c

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• Provide consistent interface to vp child nodes

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  281972e

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• Add class for tracking vp tree search state

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  9acdeed

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• PEP8 and stylistic cleanup for VP tree source

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  3edd2f5

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• Use fastest conversion for short bit vectors

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  01862fd

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• Test 63-bit vector conversion for "small" variants

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  bb63942

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• Fix whitespace to prefer visual indentation

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  066cc28

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Commits on Nov 6, 2017

• Update release notes for VP trees

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  4b5c248

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