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WIP:Chris patches #49

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WIP:Chris patches #49

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baaeac7
Commit Temp File for creating patches
cfunk1210 Mar 22, 2022
6a896e2
Updated Patches algorithm - Still need to generalize the network but …
cfunk1210 Mar 29, 2022
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16,147 changes: 16,147 additions & 0 deletions Experiments/ARUNet-MiddleLines/ARUNet-3D-Middle-ExtrudedNS-VFold-Chris-Copy1.ipynb
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40,057 changes: 40,057 additions & 0 deletions Experiments/ARUNet-MiddleLines/ARUNet-3D-Middle-ExtrudedNS-VFold-Chris-Patches.ipynb
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16,142 changes: 16,142 additions & 0 deletions Experiments/ARUNet-MiddleLines/ARUNet-3D-Middle-ExtrudedNS-VFold-Chris.ipynb
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2,582 changes: 2,582 additions & 0 deletions Experiments/ARUNet-MiddleLines/ARUNet-3D-Middle-ExtrudedNS-VFold-Test-Copy1.ipynb
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16 changes: 14 additions & 2 deletions Experiments/ARUNet-MiddleLines/ARUNet-3D-Middle-ExtrudedNS-VFold-Test.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,19 @@
"scrolled": true,
"tags": []
},
"outputs": [],
"outputs": [
{
"ename": "ImportError",
"evalue": "cannot import name 'TubeTK' from 'itk' (/home/local/KHQ/christopher.funk/miniconda3/envs/myenv/lib/python3.9/site-packages/itk/__init__.py)",
"output_type": "error",
"traceback": [
"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
"\u001b[0;31mImportError\u001b[0m Traceback (most recent call last)",
"\u001b[0;32m/tmp/ipykernel_2576751/1503744359.py\u001b[0m in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[1;32m 38\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 39\u001b[0m \u001b[0;32mimport\u001b[0m \u001b[0mitk\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m---> 40\u001b[0;31m \u001b[0;32mfrom\u001b[0m \u001b[0mitk\u001b[0m \u001b[0;32mimport\u001b[0m \u001b[0mTubeTK\u001b[0m \u001b[0;32mas\u001b[0m \u001b[0mttk\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 41\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 42\u001b[0m \u001b[0;32mimport\u001b[0m \u001b[0mnumpy\u001b[0m \u001b[0;32mas\u001b[0m \u001b[0mnp\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
"\u001b[0;31mImportError\u001b[0m: cannot import name 'TubeTK' from 'itk' (/home/local/KHQ/christopher.funk/miniconda3/envs/myenv/lib/python3.9/site-packages/itk/__init__.py)"
]
}
],
"source": [
"from monai.utils import first, set_determinism\n",
"from monai.transforms import (\n",
Expand Down Expand Up @@ -2562,7 +2574,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.8"
"version": "3.9.7"
}
},
"nbformat": 4,
Expand Down
7,839 changes: 7,785 additions & 54 deletions Experiments/ARUNet-MiddleLines/ARUNet-3D-Middle-ExtrudedNS-VFold.ipynb
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17 changes: 17 additions & 0 deletions Experiments/ARUNet-MiddleLines/cufile.log
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Original file line number Diff line number Diff line change
@@ -0,0 +1,17 @@
14-12-2021 17:48:35:505 [pid=2576751 tid=2576751] NOTICE cufio-drv:620 running in compatible mode
14-12-2021 17:49:03:988 [pid=2576957 tid=2576957] NOTICE cufio-drv:620 running in compatible mode
18-01-2022 16:08:41:265 [pid=1157048 tid=1157048] NOTICE cufio-drv:620 running in compatible mode
18-01-2022 16:42:16:629 [pid=1197498 tid=1197498] NOTICE cufio-drv:620 running in compatible mode
20-01-2022 11:13:30:408 [pid=1558746 tid=1558746] NOTICE cufio-drv:620 running in compatible mode
20-01-2022 11:38:29:229 [pid=1562314 tid=1562314] NOTICE cufio-drv:620 running in compatible mode
20-01-2022 13:42:26:660 [pid=1580070 tid=1580070] NOTICE cufio-drv:620 running in compatible mode
20-01-2022 14:37:40:180 [pid=1710093 tid=1710093] NOTICE cufio-drv:620 running in compatible mode
20-01-2022 14:54:40:149 [pid=1759474 tid=1759474] NOTICE cufio-drv:620 running in compatible mode
20-01-2022 14:54:45:300 [pid=1759520 tid=1759520] NOTICE cufio-drv:620 running in compatible mode
20-01-2022 15:18:49:428 [pid=1864864 tid=1864864] NOTICE cufio-drv:620 running in compatible mode
20-01-2022 15:29:42:437 [pid=1913394 tid=1913394] NOTICE cufio-drv:620 running in compatible mode
09-03-2022 17:04:21:582 [pid=312946 tid=312946] NOTICE cufio-drv:620 running in compatible mode
17-03-2022 15:45:53:591 [pid=417918 tid=417918] NOTICE cufio-drv:693 running in compatible mode
17-03-2022 16:12:07:54 [pid=421224 tid=421224] NOTICE cufio-drv:693 running in compatible mode
22-03-2022 15:16:56:64 [pid=205165 tid=205165] NOTICE cufio-drv:693 running in compatible mode
22-03-2022 15:17:59:261 [pid=203810 tid=203810] NOTICE cufio-drv:693 running in compatible mode
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