prepare release 3.3.2

KohlbacherLab · Dec 9, 2023 · 6b5c354 · 6b5c354
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,6 +3,19 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## v3.3.2 - 2023-12-15
+
+### `Added`
+
+-  [#93](https://github.com/KohlbacherLab/epytope/pull/93) Added NetMHCIIpan version 4.2 interface [#92](https://github.com/KohlbacherLab/epytope/issues/92)
+-  [#96](https://github.com/KohlbacherLab/epytope/pull/93) Added NetMHCIIpan version 4.3 interface [#95](https://github.com/KohlbacherLab/epytope/issues/95)
+
+### `Changed`
+
+### `Fixed`
+
+- [#93](https://github.com/KohlbacherLab/epytope/pull/93) Fixed length restriction of NetMHCIIpan interfaces [#91](https://github.com/KohlbacherLab/epytope/issues/91)
+
 ## v3.3.1 - 2023-04-25
 
 ### `Added`

diff --git a/README.md b/README.md
@@ -63,7 +63,7 @@ Currently **epytope** provides implementations of several prediction methods or
   - [NetMHC](https://pubmed.ncbi.nlm.nih.gov/26515819/) 3.0, 3.4, 4.0
   - [NetMHCII](https://pubmed.ncbi.nlm.nih.gov/29315598/) 2.2, 2.3
   - [NetMHCpan](https://pubmed.ncbi.nlm.nih.gov/28978689/) 2.4, 2.8, 3.0, 4.0, 4.1
-  - [NetMHCIIpan](https://pubmed.ncbi.nlm.nih.gov/32406916/) 3.0, 3.1, 4.0, 4.1
+  - [NetMHCIIpan](https://pubmed.ncbi.nlm.nih.gov/32406916/) 3.0, 3.1, 4.0, 4.1, 4.2, 4.3
   - [PickPocket](https://pubmed.ncbi.nlm.nih.gov/19297351/) 1.1
   - [NetCTLpan](https://pubmed.ncbi.nlm.nih.gov/20379710/) 1.1
 - Epitope Selection

diff --git a/epytope/tutorials/EpitopePrediction.ipynb b/epytope/tutorials/EpitopePrediction.ipynb
@@ -28,14 +28,17 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "Using TensorFlow backend.\n"
+     "ename": "",
+     "evalue": "",
+     "output_type": "error",
+     "traceback": [
+      "\u001b[1;31mRunning cells with 'epytope' requires the ipykernel package.\n",
+      "\u001b[1;31mRun the following command to install 'ipykernel' into the Python environment. \n",
+      "\u001b[1;31mCommand: 'conda install -n epytope ipykernel --update-deps --force-reinstall'"
      ]
     }
    ],
@@ -202,10 +205,10 @@
      "output_type": "stream",
      "text": [
       "netmhc 3.0a,3.4,4.0\n",
-      "netmhcpan 2.4,2.8,3.0,4.0\n",
+      "netmhcpan 2.4,2.8,3.0,4.0,4.1\n",
       "netmhcstabpan 1.0\n",
       "netmhcii 2.2\n",
-      "netmhciipan 3.0,3.1\n",
+      "netmhciipan 3.0,3.1,4.0,4.1,4.2,4.3\n",
       "pickpocket 1.1\n",
       "netctlpan 1.1\n",
       "syfpeithi 1.0\n",
@@ -1085,7 +1088,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.13"
+   "version": "3.7.12"
   }
  },
  "nbformat": 4,

diff --git a/setup.py b/setup.py
@@ -21,7 +21,7 @@
     name='epytope',
 
     # Version:
-    version='3.3.1',
+    version='3.3.2',
 
     description='A Framework for Epitope Detection and Vaccine Design',
     long_description=long_description,
@@ -35,8 +35,8 @@
     author_email='[email protected], [email protected], [email protected], [email protected] ',
 
     # maintainer details
-    maintainer='Christopher Mohr',
-    maintainer_email='christopher.mohr@uni-tuebingen.de',
+    maintainer='Christopher Mohr, Jonas Scheid',
+    maintainer_email='[email protected], jonas.scheid@uni-tuebingen.de',
 
     # Choose your license
     license='BSD',