Fix netmhc len restriction, add netmhciipan 4.2 interface

[jonasscheid]

This PR

• Fixes wrong length boundaries of netmhciipan 4.X interfaces NetMHCpan: False peptide min/max boundaries #91
• Adds new netmhciipan 4.2 interface Add netmhciipan 4.2 interface #92

[jonasscheid]

======================================================================
ERROR: test_MartsAdapter (epytope.test.TestIO.TestIO)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/runner/work/epytope/epytope/epytope/test/TestIO.py", line 120, in test_MartsAdapter
    'ENST00000361221', type=EIdentifierTypes.ENSEMBL))
  File "/home/runner/work/epytope/epytope/epytope/IO/MartsAdapter.py", line 380, in get_transcript_sequence
    dataset_attributes = self.get_dataset_attributes(_db)
  File "/home/runner/work/epytope/epytope/epytope/IO/MartsAdapter.py", line 232, in get_dataset_attributes
    df_part.columns = ['attribute_id', 'attribute_name', 'description']
  File "/tmp/condaenv/lib/python3.7/site-packages/pandas/core/generic.py", line 5500, in __setattr__
    return object.__setattr__(self, name, value)
  File "pandas/_libs/properties.pyx", line 70, in pandas._libs.properties.AxisProperty.__set__
  File "/tmp/condaenv/lib/python3.7/site-packages/pandas/core/generic.py", line 766, in _set_axis
    self._mgr.set_axis(axis, labels)
  File "/tmp/condaenv/lib/python3.7/site-packages/pandas/core/internals/managers.py", line 216, in set_axis
    self._validate_set_axis(axis, new_labels)
  File "/tmp/condaenv/lib/python3.7/site-packages/pandas/core/internals/base.py", line 58, in _validate_set_axis
    f"Length mismatch: Expected axis has {old_len} elements, new "
ValueError: Length mismatch: Expected axis has 1 elements, new values have 3 elements

@christopher-mohr Could you have a look at this?

[christopher-mohr]

======================================================================
ERROR: test_MartsAdapter (epytope.test.TestIO.TestIO)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/runner/work/epytope/epytope/epytope/test/TestIO.py", line 120, in test_MartsAdapter
    'ENST00000361221', type=EIdentifierTypes.ENSEMBL))
  File "/home/runner/work/epytope/epytope/epytope/IO/MartsAdapter.py", line 380, in get_transcript_sequence
    dataset_attributes = self.get_dataset_attributes(_db)
  File "/home/runner/work/epytope/epytope/epytope/IO/MartsAdapter.py", line 232, in get_dataset_attributes
    df_part.columns = ['attribute_id', 'attribute_name', 'description']
  File "/tmp/condaenv/lib/python3.7/site-packages/pandas/core/generic.py", line 5500, in __setattr__
    return object.__setattr__(self, name, value)
  File "pandas/_libs/properties.pyx", line 70, in pandas._libs.properties.AxisProperty.__set__
  File "/tmp/condaenv/lib/python3.7/site-packages/pandas/core/generic.py", line 766, in _set_axis
    self._mgr.set_axis(axis, labels)
  File "/tmp/condaenv/lib/python3.7/site-packages/pandas/core/internals/managers.py", line 216, in set_axis
    self._validate_set_axis(axis, new_labels)
  File "/tmp/condaenv/lib/python3.7/site-packages/pandas/core/internals/base.py", line 58, in _validate_set_axis
    f"Length mismatch: Expected axis has {old_len} elements, new "
ValueError: Length mismatch: Expected axis has 1 elements, new values have 3 elements

@christopher-mohr Could you have a look at this?

I will have a look today or tomorrow.

[christopher-mohr]

To me it seems like some of the issues at least are related to the changes with respect to GitHub actions
https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

I will try to update the actions in a separate PR.

[christopher-mohr]

LGTM