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38 Open 240 Closed
38 Open 240 Closed
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Issues list

Add AF3 backend
#468 opened Nov 27, 2024 by abiadak
How to speed up protein screening
#467 opened Nov 25, 2024 by gabrielpan147
7
Add browsable link to the features database documentation Improvements or additions to documentation
#466 opened Nov 24, 2024 by jkosinski Priority1
@DimaMolod
Do not require MSAs for the TrueMultimer default mode enhancement New feature or request
#465 opened Nov 23, 2024 by jkosinski
@DimaMolod
Add --threshold_clashes and --plddt_threshold to the TrueMultimer quick mode enhancement New feature or request
#464 opened Nov 23, 2024 by jkosinski
@DimaMolod
2
Specifying residue ranges does not work for TrueMultimer "quick mode" bug Something isn't working
#463 opened Nov 21, 2024 by jkosinski
@DimaMolod
Explain TrueMultimer logs better enhancement New feature or request
#459 opened Nov 15, 2024 by jkosinski For_later
@DimaMolod
Add _entry.id to custom template if does not exist enhancement New feature or request
#458 opened Nov 15, 2024 by jkosinski
@DimaMolod
Add pre-filter function to "–models_to_relax=Best"
#456 opened Nov 12, 2024 by rukibuki
Update AlphaLink2 citation documentation Improvements or additions to documentation
#447 opened Oct 31, 2024 by jkosinski
@gilep
FATAL ERROR singularity build --sandbox test fold_analysis_latest.s if
#445 opened Oct 31, 2024 by wanchun0715
2
Error with singularity during installation
#439 opened Oct 18, 2024 by ebettler
6
Update CCP4 for non-snakemake documentation Improvements or additions to documentation
#434 opened Oct 16, 2024 by jkosinski
@DimaMolod @gilep
Instructions how to update AP snakemake documentation Improvements or additions to documentation
#433 opened Oct 16, 2024 by jkosinski Priority1
@DimaMolod @maurerv
2
Add ColabFold backend enhancement New feature or request
#428 opened Oct 15, 2024 by jkosinski For_later
Some candidates in the prediction step lead to the following error :
#427 opened Oct 14, 2024 by ThisIsIt42
4
Documentation for other options documentation Improvements or additions to documentation
#418 opened Oct 11, 2024 by jkosinski Priority1
@DimaMolod @gilep
Move submodules one level deeper to avoid conflicts with globally installed AF,AL,CF enhancement New feature or request
#409 opened Oct 8, 2024 by DimaMolod
Add dropout
#340 opened May 14, 2024 by jkosinski For_later
GPU not working when run_multimer_jobs.py
#339 opened May 14, 2024 by polya18
3
Too many proteins in one interaction ?
#337 opened May 13, 2024 by Qrouger Version2
2
Add generation of JSON for AlphaFold server enhancement New feature or request
#336 opened May 11, 2024 by jkosinski
using several GPUs on a single workstation
#334 opened May 8, 2024 by errinaceus
@dingquanyu
1
Make it possible to run create_individual_features.py with multimeric tempaltes using mmseqs2
#332 opened May 6, 2024 by DimaMolod For_later
1
Flash attention? enhancement New feature or request
#320 opened Apr 21, 2024 by jkosinski For_later
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