[GeoMechanicsApplication] Calculate strains #22664
Workflow file for this run
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name: CI | |
on: | |
pull_request: | |
branches: | |
- master | |
workflow_dispatch: | |
# for cancelling redundant runs | |
concurrency: | |
group: ci-${{ github.head_ref }} | |
cancel-in-progress: true | |
permissions: | |
contents: read | |
jobs: | |
changed-files: | |
runs-on: ubuntu-latest | |
# see https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#example-defining-outputs-for-a-job | |
outputs: | |
files: ${{ steps.get_files.outputs.changed_files }} | |
steps: | |
- uses: actions/checkout@v4 | |
- id: get_files | |
run: | | |
echo "changed_files=$(python3 .github/get_files_changed_in_pr.py)" >> $GITHUB_OUTPUT | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
GITHUB_PR_NUMBER: ${{ github.event.pull_request.number }} | |
ubuntu: | |
runs-on: ubuntu-latest | |
needs: changed-files | |
strategy: | |
fail-fast: false | |
matrix: | |
build-type: [Custom, FullDebug] | |
compiler: [gcc, clang] | |
env: | |
KRATOS_BUILD_TYPE: ${{ matrix.build-type }} | |
KRATOS_CI_CHANGED_FILES: ${{needs.changed-files.outputs.files}} | |
KRATOS_CI_APPLICATIONS: ".github/workflows/ci_apps_linux.json" | |
KRATOS_CI_CORES: 4 # Current limits are 4 CPU and 16 GB Ram | |
OMPI_MCA_rmaps_base_oversubscribe: 1 # Allow oversubscription for MPI (needed for OpenMPI >= 3.0) | |
OMPI_MCA_btl_vader_single_copy_mechanism: none # Suppressing some annoying OpenMPI messages | |
container: | |
image: kratosmultiphysics/kratos-image-ci-ubuntu-22-04:latest | |
options: --user 1001 | |
steps: | |
- uses: actions/checkout@v4 | |
# - name: Installing dependencies | |
# => must be added to the docker container to avoid reinstalling it in every CI run | |
- name: CI configuration | |
shell: bash | |
run: python3 kratos/python_scripts/testing/ci_utilities.py | |
- name: Build | |
shell: bash | |
run: | | |
if [ ${{ matrix.compiler }} = gcc ]; then | |
export CC=/usr/bin/gcc-12 | |
export CXX=/usr/bin/g++-12 | |
export KRATOS_CMAKE_OPTIONS_FLAGS="-DUSE_EIGEN_MKL=ON -DUSE_EIGEN_FEAST=ON -DTRILINOS_EXCLUDE_AMESOS2_SOLVER=OFF" | |
export KRATOS_CMAKE_CXX_FLAGS="-Werror -Wno-deprecated-declarations -Wignored-qualifiers" | |
elif [ ${{ matrix.compiler }} = clang ]; then | |
export CC=/usr/bin/clang-14 | |
export CXX=/usr/bin/clang++-14 | |
export KRATOS_CMAKE_CXX_FLAGS="-Werror -Wno-deprecated-declarations" | |
export KRATOS_CMAKE_OPTIONS_FLAGS="-DTRILINOS_EXCLUDE_AMESOS2_SOLVER=OFF" | |
else | |
echo 'Unsupported compiler: ${{ matrix.compiler }}' | |
exit 1 | |
fi | |
source /opt/intel/oneapi/setvars.sh | |
cp .github/workflows/configure_core.sh configure.sh | |
python3 kratos/python_scripts/testing/ci_utilities.py | |
bash configure.sh | |
rm -r ${GITHUB_WORKSPACE}/build | |
- name: Build Dependencies | |
shell: bash | |
run: | | |
if [ ${{ matrix.compiler }} = gcc ]; then | |
export CC=/usr/bin/gcc-12 | |
export CXX=/usr/bin/g++-12 | |
export KRATOS_CMAKE_OPTIONS_FLAGS="-DMMG_ROOT=/external_libraries/mmg/mmg_5_5_1/ -DPMMG_ROOT=/external_libraries/ParMmg_5ffc6ad -DINCLUDE_PMMG=ON" | |
export KRATOS_CMAKE_CXX_FLAGS="-Werror -Wno-deprecated-declarations -Wignored-qualifiers" | |
elif [ ${{ matrix.compiler }} = clang ]; then | |
export CC=/usr/bin/clang-14 | |
export CXX=/usr/bin/clang++-14 | |
export KRATOS_CMAKE_CXX_FLAGS="-Werror -Wno-deprecated-declarations" | |
export KRATOS_CMAKE_OPTIONS_FLAGS="-DMMG_ROOT=/external_libraries/mmg/mmg_5_5_1/" | |
else | |
echo 'Unsupported compiler: ${{ matrix.compiler }}' | |
exit 1 | |
fi | |
source /opt/intel/oneapi/setvars.sh | |
cp .github/workflows/configure_dependencies.sh configure.sh | |
bash configure.sh | |
rm -r ${GITHUB_WORKSPACE}/build | |
- name: Build Core Apps | |
shell: bash | |
run: | | |
if [ ${{ matrix.compiler }} = gcc ]; then | |
export CC=/usr/bin/gcc-12 | |
export CXX=/usr/bin/g++-12 | |
export KRATOS_CMAKE_OPTIONS_FLAGS="" | |
export KRATOS_CMAKE_CXX_FLAGS="-Werror -Wno-deprecated-declarations -Wignored-qualifiers" | |
elif [ ${{ matrix.compiler }} = clang ]; then | |
export CC=/usr/bin/clang-14 | |
export CXX=/usr/bin/clang++-14 | |
export KRATOS_CMAKE_CXX_FLAGS="-Werror -Wno-deprecated-declarations" | |
export KRATOS_CMAKE_OPTIONS_FLAGS="" | |
else | |
echo 'Unsupported compiler: ${{ matrix.compiler }}' | |
exit 1 | |
fi | |
source /opt/intel/oneapi/setvars.sh | |
cp .github/workflows/configure_core_applications.sh configure.sh | |
bash configure.sh | |
rm -r ${GITHUB_WORKSPACE}/build | |
- name: Build Research Apps | |
shell: bash | |
run: | | |
if [ ${{ matrix.compiler }} = gcc ]; then | |
export CC=/usr/bin/gcc-12 | |
export CXX=/usr/bin/g++-12 | |
export KRATOS_CMAKE_OPTIONS_FLAGS="" | |
export KRATOS_CMAKE_CXX_FLAGS="-Werror -Wno-deprecated-declarations -Wignored-qualifiers" | |
elif [ ${{ matrix.compiler }} = clang ]; then | |
export CC=/usr/bin/clang-14 | |
export CXX=/usr/bin/clang++-14 | |
export KRATOS_CMAKE_CXX_FLAGS="-Werror -Wno-deprecated-declarations" | |
export KRATOS_CMAKE_OPTIONS_FLAGS="" | |
else | |
echo 'Unsupported compiler: ${{ matrix.compiler }}' | |
exit 1 | |
fi | |
source /opt/intel/oneapi/setvars.sh | |
cp .github/workflows/configure_research_applications.sh configure.sh | |
bash configure.sh | |
rm -r ${GITHUB_WORKSPACE}/build | |
- name: Running python tests | |
shell: bash | |
run: | | |
if [ ${{ matrix.compiler }} = gcc ]; then | |
source /opt/intel/oneapi/setvars.sh | |
fi | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }} | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs | |
python3 kratos/python_scripts/testing/run_tests.py -v 2 -l nightly -c python3 | |
- name: Prepare Parallel Env | |
shell: bash | |
run: | | |
echo "localhost slots=2" >> ${GITHUB_WORKSPACE}/ci_hostfile | |
- name: Running MPI C++ tests (2 Cores) | |
shell: bash | |
timeout-minutes : 10 | |
run: | | |
if [ ${{ matrix.compiler }} = gcc ]; then | |
source /opt/intel/oneapi/setvars.sh | |
fi | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }} | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs | |
mpiexec -np 2 --hostfile ${GITHUB_WORKSPACE}/ci_hostfile python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py --using-mpi | |
- name: Running MPI C++ tests (3 Cores) | |
shell: bash | |
timeout-minutes : 10 | |
run: | | |
if [ ${{ matrix.compiler }} = gcc ]; then | |
source /opt/intel/oneapi/setvars.sh | |
fi | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }} | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs | |
mpiexec -np 3 --hostfile ${GITHUB_WORKSPACE}/ci_hostfile python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py --using-mpi | |
- name: Running MPI C++ tests (4 Cores) | |
shell: bash | |
timeout-minutes : 10 | |
run: | | |
if [ ${{ matrix.compiler }} = gcc ]; then | |
source /opt/intel/oneapi/setvars.sh | |
fi | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }} | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs | |
mpiexec -np 4 --hostfile ${GITHUB_WORKSPACE}/ci_hostfile python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py --using-mpi | |
- name: Running Python MPI tests (2 Cores) | |
shell: bash | |
run: | | |
if [ ${{ matrix.compiler }} = gcc ]; then | |
source /opt/intel/oneapi/setvars.sh | |
fi | |
export OMP_NUM_THREADS=1 | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }} | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs | |
python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l mpi_nightly -n 2 --mpi_flags="--hostfile ${GITHUB_WORKSPACE}/ci_hostfile" | |
- name: Running Python MPI tests (3 Cores) | |
shell: bash | |
run: | | |
if [ ${{ matrix.compiler }} = gcc ]; then | |
source /opt/intel/oneapi/setvars.sh | |
fi | |
export OMP_NUM_THREADS=1 | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }} | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs | |
python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l mpi_nightly -n 3 --mpi_flags="--hostfile ${GITHUB_WORKSPACE}/ci_hostfile" | |
- name: Running Python MPI tests (4 Cores) | |
shell: bash | |
run: | | |
if [ ${{ matrix.compiler }} = gcc ]; then | |
source /opt/intel/oneapi/setvars.sh | |
fi | |
export OMP_NUM_THREADS=1 | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }} | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs | |
python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l mpi_nightly -n 4 --mpi_flags="--hostfile ${GITHUB_WORKSPACE}/ci_hostfile" | |
windows: | |
runs-on: windows-2022 | |
needs: changed-files | |
env: | |
KRATOS_BUILD_TYPE: Custom | |
KRATOS_CI_CHANGED_FILES: ${{needs.changed-files.outputs.files}} | |
KRATOS_CI_APPLICATIONS: ".github/workflows/ci_apps_windows.json" | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: '3.8' | |
- name: CI configuration | |
shell: bash | |
run: python3 kratos/python_scripts/testing/ci_utilities.py | |
- name: Download boost | |
run: | | |
$url = "https://archives.boost.io/release/1.74.0/source/boost_1_74_0.tar.gz" | |
(New-Object System.Net.WebClient).DownloadFile($url, "$env:TEMP\boost.tar.gz") | |
7z.exe x "$env:TEMP\boost.tar.gz" -o"$env:TEMP\boostArchive" -y | Out-Null | |
7z.exe x "$env:TEMP\boostArchive" -o"$env:TEMP\boost" -y | Out-Null | |
- name: Installing dependencies | |
shell: cmd | |
run: | | |
pip install numpy | |
pip install sympy | |
pip install scipy | |
pip install h5py | |
pip install parameterized | |
- name: Build | |
shell: cmd | |
run: | | |
copy .\.github\workflows\configure.cmd | |
python kratos/python_scripts/testing/ci_utilities.py | |
configure.cmd | |
- name: Running python tests | |
shell: cmd | |
run: | | |
set PYTHONPATH=%PYTHONPATH%;%GITHUB_WORKSPACE%/bin/%KRATOS_BUILD_TYPE% | |
set PATH=%PATH%;%GITHUB_WORKSPACE%/bin/%KRATOS_BUILD_TYPE%/libs | |
python kratos/python_scripts/testing/run_tests.py -l nightly -c python | |
centos: | |
runs-on: ubuntu-latest | |
needs: changed-files | |
env: | |
KRATOS_BUILD_TYPE: Custom | |
KRATOS_CI_CHANGED_FILES: ${{needs.changed-files.outputs.files}} | |
KRATOS_CI_APPLICATIONS: ".github/workflows/ci_apps_centos.json" | |
container: | |
image: kratosmultiphysics/kratos-image-ci-centos7:latest | |
options: --user 1001 | |
steps: | |
- uses: actions/checkout@v3 | |
# - name: Installing dependencies | |
# => must be added to the docker container to avoid reinstalling it in every CI run | |
- name: CI configuration | |
shell: bash | |
run: python3.8 kratos/python_scripts/testing/ci_utilities.py | |
- name: Build | |
run: | | |
export KRATOS_CMAKE_CXX_FLAGS="-Werror -Wno-deprecated-declarations -Wignored-qualifiers" | |
cp .github/workflows/centos_configure.sh centos_configure.sh | |
bash centos_configure.sh | |
- name: Running python tests | |
run: | | |
export PYTHONPATH=${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${GITHUB_WORKSPACE}/bin/Custom/libs | |
python3.8 kratos/python_scripts/testing/run_tests.py -l nightly -c python3.8 | |
ubuntu-core-without-unity: | |
runs-on: ubuntu-latest | |
needs: changed-files | |
env: | |
KRATOS_BUILD_TYPE: Custom | |
KRATOS_CI_CHANGED_FILES: ${{needs.changed-files.outputs.files}} | |
KRATOS_CI_APPLICATIONS: "ONLY_CORE" | |
OMPI_MCA_rmaps_base_oversubscribe: 1 # Allow oversubscription for MPI (needed for OpenMPI >= 3.0) | |
container: | |
image: kratosmultiphysics/kratos-image-ci-ubuntu-22-04:latest | |
options: --user 1001 | |
steps: | |
- uses: actions/checkout@v4 | |
- name: CI configuration | |
shell: bash | |
run: python3 kratos/python_scripts/testing/ci_utilities.py | |
- name: Build | |
shell: bash | |
run: | | |
export CC=/usr/bin/clang-14 | |
export CXX=/usr/bin/clang++-14 | |
export KRATOS_SOURCE="${KRATOS_SOURCE:-${PWD}}" | |
export KRATOS_BUILD="${KRATOS_SOURCE}/build" | |
export KRATOS_APP_DIR="${KRATOS_SOURCE}/applications" | |
export PYTHON_EXECUTABLE="/usr/bin/python3" | |
export KRATOS_INSTALL_PYTHON_USING_LINKS=ON | |
add_app () { | |
export KRATOS_APPLICATIONS="${KRATOS_APPLICATIONS}$1;" | |
} | |
add_app ${KRATOS_APP_DIR}/LinearSolversApplication; | |
add_app ${KRATOS_APP_DIR}/MetisApplication; | |
add_app ${KRATOS_APP_DIR}/TrilinosApplication; | |
source /opt/intel/oneapi/setvars.sh | |
# Configure | |
cmake -H"${KRATOS_SOURCE}" -B"${KRATOS_BUILD}/${KRATOS_BUILD_TYPE}" \ | |
-DUSE_MPI=ON \ | |
-DTRILINOS_INCLUDE_DIR="/usr/include/trilinos" \ | |
-DTRILINOS_LIBRARY_DIR="/usr/lib/x86_64-linux-gnu" \ | |
-DTRILINOS_LIBRARY_PREFIX="trilinos_" \ | |
-DKRATOS_USE_PCH=ON | |
# Build | |
# Please do not use more than 2 cores or it will produce an out of heap memory error | |
cmake --build "${KRATOS_BUILD}/${KRATOS_BUILD_TYPE}" --target install -- -j2 | |
- name: Running python tests | |
shell: bash | |
run: | | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
python3 kratos/python_scripts/testing/run_tests.py -l nightly -c python3 | |
- name: Running MPI C++ tests (2 Cores) | |
shell: bash | |
timeout-minutes : 10 | |
run: | | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
mpiexec -np 2 python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py --using-mpi | |
- name: Running MPI C++ tests (3 Cores) | |
shell: bash | |
timeout-minutes : 10 | |
run: | | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
mpiexec -np 3 python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py --using-mpi | |
- name: Running MPI C++ tests (4 Cores) | |
shell: bash | |
timeout-minutes : 10 | |
run: | | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
mpiexec -np 4 python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py --using-mpi | |
- name: Running Python MPI tests (2 Cores) | |
shell: bash | |
run: | | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l mpi_nightly -n 2 | |
- name: Running Python MPI tests (3 Cores) | |
shell: bash | |
run: | | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l mpi_nightly -n 3 | |
- name: Running Python MPI tests (4 Cores) | |
shell: bash | |
run: | | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l mpi_nightly -n 4 | |
windows-core-without-unity: | |
runs-on: windows-2022 | |
needs: changed-files | |
env: | |
KRATOS_BUILD_TYPE: Custom | |
KRATOS_CI_CHANGED_FILES: ${{needs.changed-files.outputs.files}} | |
KRATOS_CI_APPLICATIONS: "ONLY_CORE" | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: '3.8' | |
- name: CI configuration | |
shell: bash | |
run: python3 kratos/python_scripts/testing/ci_utilities.py | |
- name: Download boost | |
run: | | |
$url = "https://archives.boost.io/release/1.74.0/source/boost_1_74_0.tar.gz" | |
(New-Object System.Net.WebClient).DownloadFile($url, "$env:TEMP\boost.tar.gz") | |
7z.exe x "$env:TEMP\boost.tar.gz" -o"$env:TEMP\boostArchive" -y | Out-Null | |
7z.exe x "$env:TEMP\boostArchive" -o"$env:TEMP\boost" -y | Out-Null | |
- name: Installing dependencies | |
shell: cmd | |
run: | | |
pip install numpy | |
pip install sympy | |
pip install scipy | |
- name: Build | |
shell: cmd | |
run: | | |
call "%ProgramFiles%\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvarsall.bat" x64 || goto :error | |
set CC=cl.exe | |
set CXX=cl.exe | |
set KRATOS_SOURCE=%cd% | |
set KRATOS_BUILD=%cd%\build | |
set KRATOS_APP_DIR=applications | |
set KRATOS_APPLICATIONS=%KRATOS_APP_DIR%\LinearSolversApplication; | |
del /F /Q "%KRATOS_BUILD%\%KRATOS_BUILD_TYPE%\cmake_install.cmake" | |
del /F /Q "%KRATOS_BUILD%\%KRATOS_BUILD_TYPE%\CMakeCache.txt" | |
del /F /Q "%KRATOS_BUILD%\%KRATOS_BUILD_TYPE%\CMakeFiles" | |
cmake ^ | |
-G"Visual Studio 17 2022" ^ | |
-H"%KRATOS_SOURCE%" ^ | |
-B"%KRATOS_BUILD%\%KRATOS_BUILD_TYPE%" ^ | |
-DBOOST_ROOT="%TEMP%\boost" ^ | |
-DCMAKE_CXX_FLAGS="/Od /we4661 /we4804 /WX /wd4996" ^ | |
-DKRATOS_USE_PCH=ON ^ | |
-DFORCE_LOCAL_ZLIB_COMPILATION=ON || goto :error | |
cmake --build "%KRATOS_BUILD%\%KRATOS_BUILD_TYPE%" --target all_build -- /property:configuration=%KRATOS_BUILD_TYPE% /p:Platform=x64 || goto :error | |
cmake --build "%KRATOS_BUILD%\%KRATOS_BUILD_TYPE%" --target install -- /property:configuration=%KRATOS_BUILD_TYPE% /p:Platform=x64 || goto :error | |
goto :EOF | |
:error | |
echo Failed with error #%errorlevel%. | |
exit /b %errorlevel% | |
- name: Running python tests | |
shell: cmd | |
run: | | |
set PYTHONPATH=%PYTHONPATH%;%GITHUB_WORKSPACE%/bin/%KRATOS_BUILD_TYPE% | |
set PATH=%PATH%;%GITHUB_WORKSPACE%/bin/%KRATOS_BUILD_TYPE%/libs | |
python kratos/python_scripts/testing/run_tests.py -l nightly -c python | |
ubuntu-intel-legacy: | |
runs-on: ubuntu-latest | |
env: | |
KRATOS_BUILD_TYPE: Custom | |
OMPI_MCA_rmaps_base_oversubscribe: 1 # Allow oversubscription for MPI (needed for OpenMPI >= 3.0) | |
OMPI_MCA_btl_vader_single_copy_mechanism: none # suppressing some annoying OpenMPI messages | |
OMPI_ALLOW_RUN_AS_ROOT: 1 # required since for now running as root | |
OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 # required since for now running as root | |
container: | |
image: kratosmultiphysics/kratos-image-ci-ubuntu-22-04:latest | |
# options: --user 1001 # must run as root to install the intel compiler | |
steps: | |
- uses: actions/checkout@v4 | |
# - name: Installing dependencies | |
# => must be added to the docker container to avoid reinstalling it in every CI run | |
- name: Install intel compiler | |
shell: bash | |
run: sudo apt-get install -y --no-install-recommends intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic | |
- name: Build | |
shell: bash | |
run: | | |
export CC=icc | |
export CXX=icpc | |
source /opt/intel/oneapi/setvars.sh | |
cp .github/workflows/intel_configure.sh configure.sh | |
bash configure.sh | |
- name: Running python tests | |
shell: bash | |
run: | | |
source /opt/intel/oneapi/setvars.sh | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
python3 kratos/python_scripts/testing/run_tests.py -l nightly -c python3 | |
- name: Running MPI C++ tests (2 Cores) | |
shell: bash | |
timeout-minutes : 10 | |
run: | | |
export PYTHONPATH= | |
export LD_LIBRARY_PATH= | |
source /opt/intel/oneapi/setvars.sh | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
mpiexec -np 2 python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py --using-mpi | |
- name: Running MPI C++ tests (3 Cores) | |
shell: bash | |
timeout-minutes : 10 | |
run: | | |
source /opt/intel/oneapi/setvars.sh | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
mpiexec -np 3 python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py --using-mpi | |
- name: Running MPI C++ tests (4 Cores) | |
shell: bash | |
timeout-minutes : 10 | |
run: | | |
source /opt/intel/oneapi/setvars.sh | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
mpiexec -np 4 python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py --using-mpi | |
- name: Running Python MPI tests (2 Cores) | |
shell: bash | |
run: | | |
source /opt/intel/oneapi/setvars.sh | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l mpi_nightly -n 2 | |
- name: Running Python MPI tests (3 Cores) | |
shell: bash | |
run: | | |
source /opt/intel/oneapi/setvars.sh | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l mpi_nightly -n 3 | |
- name: Running Python MPI tests (4 Cores) | |
shell: bash | |
run: | | |
source /opt/intel/oneapi/setvars.sh | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l mpi_nightly -n 4 | |
ubuntu-intel: | |
runs-on: ubuntu-latest | |
needs: changed-files | |
env: | |
KRATOS_BUILD_TYPE: Custom | |
KRATOS_CI_CHANGED_FILES: ${{needs.changed-files.outputs.files}} | |
KRATOS_CI_APPLICATIONS: ".github/workflows/ci_apps_intel.json" | |
OMPI_MCA_rmaps_base_oversubscribe: 1 # Allow oversubscription for MPI (needed for OpenMPI >= 3.0) | |
OMPI_MCA_btl_vader_single_copy_mechanism: none # suppressing some annoying OpenMPI messages | |
container: | |
image: kratosmultiphysics/kratos-image-ci-ubuntu-22-04:latest | |
options: --user 1001 | |
steps: | |
- uses: actions/checkout@v4 | |
# - name: Installing dependencies | |
# => must be added to the docker container to avoid reinstalling it in every CI run | |
- name: CI configuration | |
shell: bash | |
run: python3 kratos/python_scripts/testing/ci_utilities.py | |
- name: Build | |
shell: bash | |
run: | | |
export CC=icx | |
export CXX=icpx | |
source /opt/intel/oneapi/setvars.sh | |
cp .github/workflows/intel_configure.sh configure.sh | |
bash configure.sh | |
- name: Running python tests | |
shell: bash | |
continue-on-error: true # TODO segfaults in cpp-tests | |
run: | | |
source /opt/intel/oneapi/setvars.sh | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
python3 kratos/python_scripts/testing/run_tests.py -l nightly -c python3 | |
- name: Running MPI C++ tests (2 Cores) | |
shell: bash | |
timeout-minutes : 10 | |
run: | | |
source /opt/intel/oneapi/setvars.sh | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
mpiexec -np 2 python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py --using-mpi | |
- name: Running MPI C++ tests (3 Cores) | |
shell: bash | |
timeout-minutes : 10 | |
run: | | |
source /opt/intel/oneapi/setvars.sh | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
mpiexec -np 3 python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py --using-mpi | |
- name: Running MPI C++ tests (4 Cores) | |
shell: bash | |
timeout-minutes : 10 | |
run: | | |
source /opt/intel/oneapi/setvars.sh | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
mpiexec -np 4 python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py --using-mpi | |
- name: Running Python MPI tests (2 Cores) | |
shell: bash | |
run: | | |
source /opt/intel/oneapi/setvars.sh | |
export OMP_NUM_THREADS=1 | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l mpi_nightly -n 2 | |
- name: Running Python MPI tests (3 Cores) | |
shell: bash | |
run: | | |
source /opt/intel/oneapi/setvars.sh | |
export OMP_NUM_THREADS=1 | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l mpi_nightly -n 3 | |
- name: Running Python MPI tests (4 Cores) | |
shell: bash | |
run: | | |
source /opt/intel/oneapi/setvars.sh | |
export OMP_NUM_THREADS=1 | |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l mpi_nightly -n 4 |