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Phylogenetics tools! #249

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lkhilton wants to merge 17 commits intomasterLCR-BCCRC/lcr-modules:masterfrom modules/pyclone_vi/1.0LCR-BCCRC/lcr-modules:modules/pyclone_vi/1.0Copy head branch name to clipboard

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Commits

Commits on Sep 12, 2022

• Improve maf subsetting; use pre-filled Battenberg results

  lkhilton

  committed
  fda4b0a

• Add accessory files for PhyloWGS module

  lkhilton

  committed
  8db3ede

• Remove unneeded fill_battenberg files

  lkhilton

  committed
  c5d4794

Commits on Sep 13, 2022

• Working Py/PhyClone module

  lkhilton

  committed
  8a48e73

• Merge branch 'modules/phylowgs/1.0' into modules/pyclone_vi/1.0

  lkhilton

  committed
  7d1216d

• Restore files messed up by git

  lkhilton

  committed
  07989c1

• Restore files messed up by git

  lkhilton

  committed
  ada0c03

• Merge branch 'modules/pyclone_vi/1.0' of github.com:LCR-BCCRC/lcr-modules into modules/pyclone_vi/1.0

  lkhilton

  committed
  056e3a8

• Add input job grouping

  lkhilton

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  d5af90f

• Note about scratch subdirectories

  lkhilton

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  7030305

Commits on Mar 3, 2023

• Unneeded env yaml file

  lkhilton

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  59159c0

• Add dependency checking

  lkhilton

  committed
  869a266

Commits on Apr 12, 2023

• Add 3'UTR

  lkhilton

  committed
  9e31616

• Patch for GAMBLR installation

  lkhilton

  committed
  e9803de

• Include indels in maf

  lkhilton

  committed
  0cec80e

Commits on Jun 10, 2024

• Merge remote-tracking branch 'origin/master' into modules/pyclone_vi/1.0

  lkhilton

  committed
  c949cba

Commits on Jun 12, 2024

• Implement suggested changes from PR

  lkhilton

  committed
  d484a11