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Battenberg-env-fix #338

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lkhilton wants to merge 2 commits into master from battenberg-env-fix

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lkhilton commented Nov 14, 2024 •

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This PR fixes the battenberg-1.1 conda environment and restores the missing cancerit-allelecount package.

To test this env, add the following lines to the gamblr src/snakemake/run_battenberg.smk script, replacing the include line:

config["lcr-modules"]["_shared"]["lcr-modules"] = "/home/lhilton/repos/lcr-modules"
include: "/home/lhilton/repos/lcr-modules/modules/battenberg/1.1/battenberg.smk"

It should activate this existing conda env: ../../../../rmorin_scratch/conda_environments/dbcc4835d648885d9fb3ed68ef986bd2_

lkhilton added 2 commits

November 14, 2024 12:48


          repair broken battenberg env


          Add missing wget conda env

cc3d22d

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