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Collection of MATLAB functions for analysis of mitochondrial shape and dynamics.

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GPL-3.0 license
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LEB-EPFL/MitoWorks

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2 Commits
BackgroundBleachCorrect.m
BackgroundBleachCorrect.m
 
 
CorrectSnake.m
CorrectSnake.m
 
 
FilterTracks.m
FilterTracks.m
 
 
IsolateDrpCons.m
IsolateDrpCons.m
 
 
LICENSE
LICENSE
 
 
LinearBleachCorrection.m
LinearBleachCorrection.m
 
 
MinDiameterSearch2.m
MinDiameterSearch2.m
 
 
MinECurvatureExtract.m
MinECurvatureExtract.m
 
 
MitoWorksMain.m
MitoWorksMain.m
 
 
README.md
README.md
 
 
SelectTracks.m
SelectTracks.m
 
 
TrackDrp.m
TrackDrp.m
 
 
askDilateMaskSize.m
askDilateMaskSize.m
 
 
askDrp1MeasureRadius.m
askDrp1MeasureRadius.m
 
 
askFissionOrReversal.m
askFissionOrReversal.m
 
 
askFrames.m
askFrames.m
 
 
askMinDrp.m
askMinDrp.m
 
 
askMitoFound.m
askMitoFound.m
 
 
askMitoID.m
askMitoID.m
 
 
askProperties.m
askProperties.m
 
 
askRadiusCurvatureDetection.m
askRadiusCurvatureDetection.m
 
 
askSmoothingFactor.m
askSmoothingFactor.m
 
 
askTau.m
askTau.m
 
 
askTimestep.m
askTimestep.m
 
 
askViscosity.m
askViscosity.m
 
 
assignPullingFrames.m
assignPullingFrames.m
 
 
calculateBackboneLength.m
calculateBackboneLength.m
 
 
calculateForce.m
calculateForce.m
 
 
calculateFricCoeff.m
calculateFricCoeff.m
 
 
checkFinalMesh.m
checkFinalMesh.m
 
 
checkInitialContour.m
checkInitialContour.m
 
 
checkInitialMesh.m
checkInitialMesh.m
 
 
checkMesh.m
checkMesh.m
 
 
combineParentDaughterSegImage.m
combineParentDaughterSegImage.m
 
 
convertBinaryImage.m
convertBinaryImage.m
 
 
fillImageSource.m
fillImageSource.m
 
 
fillProperties.m
fillProperties.m
 
 
findCnstArea.m
findCnstArea.m
 
 
fitShiftedExp.m
fitShiftedExp.m
 
 
fitSigmoid.m
fitSigmoid.m
 
 
frameStamper.m
frameStamper.m
 
 
generateCurvature.m
generateCurvature.m
 
 
generateCurvatureFWHM.m
generateCurvatureFWHM.m
 
 
generateFinalContours.m
generateFinalContours.m
 
 
generateSnakeContour.m
generateSnakeContour.m
 
 
getFWHM.m
getFWHM.m
 
 
getImageInfo.m
getImageInfo.m
 
 
grabT.m
grabT.m
 
 
grabTL.m
grabTL.m
 
 
importTracks.m
importTracks.m
 
 
labelBWImage.m
labelBWImage.m
 
 
lineScan.m
lineScan.m
 
 
loadDrpImage.m
loadDrpImage.m
 
 
loadFinalMesh.m
loadFinalMesh.m
 
 
loadInitialContour.m
loadInitialContour.m
 
 
loadInitialMesh.m
loadInitialMesh.m
 
 
loadOriginalSingleColorImage.m
loadOriginalSingleColorImage.m
 
 
loadProbMapImage.m
loadProbMapImage.m
 
 
loadSegmentedImage.m
loadSegmentedImage.m
 
 
makeEnergyDensityMap.m
makeEnergyDensityMap.m
 
 
measureBendingEnergy.m
measureBendingEnergy.m
 
 
measureBendingEnergyFWHM.m
measureBendingEnergyFWHM.m
 
 
measureConsLength.m
measureConsLength.m
 
 
measureDrpConsSite.m
measureDrpConsSite.m
 
 
measureDrpSignal_ConsSite.m
measureDrpSignal_ConsSite.m
 
 
measureDrpSignal_finalTrack.m
measureDrpSignal_finalTrack.m
 
 
measureDrpSignal_multiTrack.m
measureDrpSignal_multiTrack.m
 
 
measureEnvCurvAtDrp1.m
measureEnvCurvAtDrp1.m
 
 
measureEnvCurvAtDrp1FWHM.m
measureEnvCurvAtDrp1FWHM.m
 
 
measureFWHMIntensityDiameter.m
measureFWHMIntensityDiameter.m
 
 
measurefitFWHMROIprofileSNR.m
measurefitFWHMROIprofileSNR.m
 
 
measurefitFWHMROIprofileSNR_PARFOR.m
measurefitFWHMROIprofileSNR_PARFOR.m
 
 
mitoMesh.m
mitoMesh.m
 
 
mitoMeshDensity.m
mitoMeshDensity.m
 
 
mitoMesh_auto.m
mitoMesh_auto.m
 
 
mitoMeshwithGT.m
mitoMeshwithGT.m
 
 
mitoProfiles.m
mitoProfiles.m
 
 
mitoPull.m
mitoPull.m
 
 
mitoTrack.m
mitoTrack.m
 
 
redoMesh.m
redoMesh.m
 
 
shiftedExpCurveModel.m
shiftedExpCurveModel.m
 
 
sigmoidCurveModel.m
sigmoidCurveModel.m
 
 
splitLastFrame.m
splitLastFrame.m
 
 
splitMito.m
splitMito.m
 
 
testmesh.m
testmesh.m
 
 
trackDrpPostFis.m
trackDrpPostFis.m
 
 
trackFinalTrack.m
trackFinalTrack.m
 
 
trackLeadingEdge.m
trackLeadingEdge.m
 
 
trackSelectedTracks.m
trackSelectedTracks.m
 
 
viscoElasticModel.m
viscoElasticModel.m
 
 

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MitoWorks

Collection of MATLAB functions for analysis of mitochondrial shape and dynamics.

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Collection of MATLAB functions for analysis of mitochondrial shape and dynamics.

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GPL-3.0 license
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