Minor fixes to help output from test clients #7
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: "CodeQL Advanced" | |
| on: | |
| push: | |
| branches: [ "master" ] | |
| pull_request: | |
| branches: [ "master" ] | |
| schedule: | |
| - cron: "16 7 * * 0" | |
| jobs: | |
| analyze: | |
| name: Analyze | |
| # Runner size impacts CodeQL analysis time. To learn more, please see: | |
| # - https://gh.io/recommended-hardware-resources-for-running-codeql | |
| # - https://gh.io/supported-runners-and-hardware-resources | |
| # - https://gh.io/using-larger-runners (GitHub.com only) | |
| # Consider using larger runners or machines with greater resources for possible analysis time improvements. | |
| runs-on: ubuntu-latest | |
| permissions: | |
| # required for all workflows | |
| security-events: write | |
| # required to fetch internal or private CodeQL packs | |
| packages: read | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - language: c-cpp | |
| build-mode: manual | |
| # CodeQL supports the following values keywords for 'language': 'c-cpp', 'csharp', 'go', 'java-kotlin', 'javascript-typescript', 'python', 'ruby', 'swift' | |
| # Use `c-cpp` to analyze code written in C, C++ or both | |
| # Use 'java-kotlin' to analyze code written in Java, Kotlin or both | |
| # Use 'javascript-typescript' to analyze code written in JavaScript, TypeScript or both | |
| # To learn more about changing the languages that are analyzed or customizing the build mode for your analysis, | |
| # see https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/customizing-your-advanced-setup-for-code-scanning. | |
| # If you are analyzing a compiled language, you can modify the 'build-mode' for that language to customize how | |
| # your codebase is analyzed, see https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/codeql-code-scanning-for-compiled-languages | |
| steps: | |
| - name: Install Dependencies (Linux) | |
| run: | | |
| sudo gem install apt-spy2 | |
| sudo apt-spy2 check | |
| sudo apt-spy2 fix --commit | |
| sudo apt update | |
| sudo apt upgrade | |
| sudo apt-get install -qq libhdf5-dev | |
| sudo apt-get install -qq hdf5-tools | |
| echo "HDF5_HOME=/usr/include/hdf5/serial,/usr/lib/x86_64-linux-gnu/hdf5/serial,/usr/bin" >> $GITHUB_ENV | |
| # Set env vars | |
| echo "CC=gcc" >> $GITHUB_ENV | |
| echo "FC=gfortran" >> $GITHUB_ENV | |
| echo "CXX=g++" >> $GITHUB_ENV | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| ################################## | |
| # INSTALL ZFP | |
| ################################## | |
| - name: install ZFP | |
| run: | | |
| git clone https://github.com/LLNL/zfp.git | |
| export HOME_DIR=$(echo ~) | |
| cd zfp | |
| mkdir build;cd build | |
| cmake -D ZFP_BIT_STREAM_WORD_SIZE=8 -D BUILD_CFP=ON -D CMAKE_INSTALL_PREFIX=$PWD/zfp -D BUILD_TESTING=OFF -D BUILD_UTILITIES=OFF .. | |
| make install | |
| echo "ZFP_HOME=$PWD/zfp" >> $GITHUB_ENV | |
| echo "ZFP_DIR=$PWD/zfp" >> $GITHUB_ENV | |
| shell: bash | |
| ################################## | |
| # BUILD AND TEST H5Z-ZFP | |
| ################################## | |
| - name: Initialize CodeQL | |
| uses: github/codeql-action/init@v3 | |
| with: | |
| languages: c-cpp | |
| build-mode: manual | |
| # If you wish to specify custom queries, you can do so here or in a config file. | |
| # By default, queries listed here will override any specified in a config file. | |
| # Prefix the list here with "+" to use these queries and those in the config file. | |
| # For more details on CodeQL's query packs, refer to: | |
| #https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs | |
| config: | | |
| query-filters: | |
| - exclude: | |
| # See: https://codeql.github.com/codeql-query-help/cpp/cpp-guarded-free/ | |
| id: cpp/guarded-free | |
| - exclude: | |
| # See: https://codeql.github.com/codeql-query-help/cpp/cpp-unused-static-function/ | |
| id: cpp/unused-static-function | |
| queries: +security-extended,security-and-quality | |
| - name: configure h5z-zfp | |
| run: | | |
| mkdir build; cd build | |
| cmake -D FORTRAN_INTERFACE=ON -D CMAKE_BUILD_TYPE=Debug -DBUILD_TESTING=ON .. | |
| shell: bash | |
| - name: build and test | |
| run: | | |
| cd build | |
| cmake --build . | |
| ctest -C Debug . | |
| shell: bash | |
| # NOTE: C/C++ does not support path-based filtering when using the manual build mode. | |
| # The "paths" and "paths-ignore" configuration properties will have no effect for this | |
| # language. If desired, you can use the advanced-security/filter-sarif Action to rewrite | |
| # the SARIF file to exclude alerts from these paths. For more information, | |
| # see https://github.com/advanced-security/filter-sarif | |
| - name: Perform CodeQL Analysis | |
| uses: github/codeql-action/analyze@v3 | |
| with: | |
| category: "/language:c-cpp" | |
| output: sarif-results | |
| upload: failure-only | |
| - name: filter-sarif | |
| uses: advanced-security/filter-sarif@main | |
| with: | |
| patterns: | | |
| -**/* | |
| src/**/* | |
| input: sarif-results/cpp.sarif | |
| output: sarif-results/cpp.sarif | |
| - name: Upload SARIF | |
| uses: github/codeql-action/upload-sarif@v3 | |
| with: | |
| sarif_file: sarif-results/cpp.sarif | |
| - name: Upload loc as a Build Artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: sarif-results | |
| path: sarif-results | |
| retention-days: 1 |