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@LaborBerlin

Labor Berlin - Charité Vivantes GmbH

Clinical Plattform "Bioinformatics & Data Science"

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  1. varvis-download varvis-download Public

    A CLI tool to download genomic analysis files from the Varvis API. Supports authentication, file type selection, proxy settings, and destination directory specification.

    JavaScript 2

  2. score-assemblies score-assemblies Public

    Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).

    Python 25 1

  3. ont-assembly-snake ont-assembly-snake Public

    Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.

    Python 22 3

Repositories

Showing 10 of 11 repositories
  • chatgpt-mattermost-bot.fork Public Forked from yGuy/chatgpt-mattermost-bot

    A very simple implementation of a service for a mattermost bot that uses ChatGPT in the backend.

    LaborBerlin/chatgpt-mattermost-bot.fork’s past year of commit activity
    TypeScript 2 MIT 55 0 0 Updated Feb 21, 2025
  • simple_baserow_api Public Forked from KuechlerO/simple_baserow_api

    A simple python wrapper for the baserow API

    LaborBerlin/simple_baserow_api’s past year of commit activity
    Python 2 Unlicense 1 0 0 Updated Feb 20, 2025
  • varvis-download Public

    A CLI tool to download genomic analysis files from the Varvis API. Supports authentication, file type selection, proxy settings, and destination directory specification.

    LaborBerlin/varvis-download’s past year of commit activity
    JavaScript 2 GPL-3.0 0 5 0 Updated Feb 19, 2025
  • MultiQC Public Forked from MultiQC/MultiQC

    Aggregate results from bioinformatics analyses across many samples into a single report.

    LaborBerlin/MultiQC’s past year of commit activity
    JavaScript 2 GPL-3.0 617 1 (1 issue needs help) 0 Updated Feb 4, 2025
  • bedrock-claude-chat Public Forked from aws-samples/bedrock-claude-chat

    AWS-native chatbot using Bedrock + Claude (+Mistral)

    LaborBerlin/bedrock-claude-chat’s past year of commit activity
    TypeScript 2 MIT-0 385 0 0 Updated Nov 28, 2024
  • LB-tbdb Public Forked from jodyphelan/tbdb

    Standard database for the TBProfiler tool

    LaborBerlin/LB-tbdb’s past year of commit activity
    Python 2 LGPL-3.0 18 0 0 Updated May 13, 2024
  • ont-assembly-snake Public

    Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.

    LaborBerlin/ont-assembly-snake’s past year of commit activity
    Python 22 MIT 3 0 0 Updated Apr 23, 2024
  • score-assemblies Public

    Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).

    LaborBerlin/score-assemblies’s past year of commit activity
    Python 25 MIT 1 0 0 Updated Apr 5, 2024
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    LaborBerlin/bioconda-recipes’s past year of commit activity
    Shell 2 MIT 3,401 0 0 Updated Apr 5, 2023
  • LB-ncov2019-artic-nf Public Forked from connor-lab/ncov2019-artic-nf

    A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

    LaborBerlin/LB-ncov2019-artic-nf’s past year of commit activity
    Nextflow 2 AGPL-3.0 88 0 0 Updated Mar 14, 2022

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