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Update to TASBE 5 #1

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Update to TASBE 5 #1

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jakebeal and others added 30 commits May 18, 2017 09:08
@jakebeal
improve explanation of colorpairfiles
82a2270
color model updated to use output directory settings
9807004
Merge branch 'master' of https://github.com/TASBE/TASBEFlowAnalytics-…
efc9fb1 
…Tutorial
updated results files
bd0a3ee
update CM to new gmdistribution constraints
27f4f61
use update autogating
9d4ecbb
one more update
8e0cad9
update test colormodel to 2.0 pre-release
c7ca6ef
placeholders no longer needed now that directories automatically self…
425f967 
…-create
note that for a single channel, color control is optional
ef870c1
Add note about when to change AP number of Gaussian components
16b14d1
correct typo
4d96301
Modified the datafile to include the new field added to ColorModel.
e9cd2c7
Merge branch 'develop' into tutorial.ltiberio.bug86
87a3b21
Accidently reverted my batch_template file that contained my fix for …
f43b7e7 
…bug #86. I added another parameter to plot_batch_histograms, the color model.
@jakebeal
Merge pull request #20 from TASBE/tutorial.ltiberio.bug86
669fe11 
Tutorial.ltiberio.bug86
@jakebeal
Merge pull request #21 from TASBE/tutorial.ltiberio.bug86
b805e1c 
Tutorial.ltiberio.bug86
@jakebeal
Revert "Tutorial.ltiberio.bug86"
40af609
@jakebeal
Merge pull request #22 from TASBE/revert-20-tutorial.ltiberio.bug86
1d4fd10 
Revert "Tutorial.ltiberio.bug86"
Merge branch 'develop'
e3a57a5
change FITC, MEFL to ERF where appropriate
b3926df
Merge branch 'master' into develop
b5f795e 
# Conflicts:
#	template_colormodel/CM120312.mat
re-run color model to match revision
e5b898d
Created a test wrapper for serialized output. Added the call to batch…
e25d0f9 
…_template.
Merge branch 'develop' into ltiberio.tutorial.issue95
8569bfe
Unit test code.
73605e5
@lisatiberio
Moved this file into the TASBE code directory.
58a3955
@lisatiberio
Updated data file because it was out of sync with class GMMGating.
ca1de03
@jakebeal
Merge pull request #23 from TASBE/develop
5976d11 
Updated data file because it was out of sync with class GMMGating.
Merge commit '58a3955fb8431ec9b307b6750d36d9e65555a936' into develop
817f6cf
jakebeal and others added 30 commits July 26, 2019 13:01
@jakebeal
Merge pull request #71 from TASBE/coverney.issue478
b7f9416 
Added manual testing protocol for template
@jakebeal
add ACS SynBio TASBE publication reference
8e5f3a0
@jakebeal
update travis to migrate from trusty to xenial configuration
db4c73c
try to add ghostscript
53b14a3
looks like pstoedit is needed too
29df1f5
try turning off graphics output
ba9a963
fix checkpointing so that graphics off continues to be respected duri…
98ac3f7 
…ng tests
@jakebeal
Merge pull request #72 from TASBE/trusty-to-xenial-migration
7227a60 
update travis to migrate from trusty to xenial configuration
Added unit tests to templates and made graphs non static
c1886f0 
Fixes TASBE/TASBEFlowAnalytics#472
@jakebeal
Merge pull request #73 from TASBE/coverney.issue478
7d98deb 
Added unit tests to templates and made graphs non static
Updated README
015c564 
Excel README already says that the run buttons only work in Windows, so just linked Excel README to README.
@jakebeal
Merge pull request #74 from TASBE/coverney.issue481
bc1c636 
Updated README
Added checkboxes to excel interface
2367163 
Added checkboxes and some more unit tests to excel interface so users can select which figures to output.
@jakebeal
Merge pull request #75 from TASBE/coverney.issue471
fc66284 
Added checkboxes to excel interface
Added in AppleScript file
abfac18
Created user guide for macOS users
b3b7387
Merge branch 'coverney.issue292' of https://github.com/TASBE/TASBEFlo…
af2df93 
…wAnalytics-Tutorial into coverney.issue292
Integrated Windows and macOS interfaces
a34453c
@jakebeal
Merge pull request #76 from TASBE/coverney.issue292
a061c6e 
Excel interface for macOS users
update the Excel file and README
bcb57b8
@jakebeal
Merge pull request #77 from TASBE/coverney.issue292
f883c97 
update the Excel file and README
Added exit functions to csv template
8467c6a
@jakebeal
Merge pull request #78 from TASBE/coverney.issue292
d222bdd 
Added exit functions to csv template
Added drop down menus in "Samples" sheet
220274b
@jakebeal
Merge pull request #79 from TASBE/coverney.issue297
2aee60e 
Added drop down menus in "Samples" sheet
add bad bead file example for testing
bb8471c
@jakebeal
add link to iGEM tutorial
833300e
very small FCS files for new test
3a3a5c0
adding additional test files
5bd7814
color model for small test
ba8ed0c
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2 participants
@jakebeal @lisatiberio