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Added post process filtering of the fold models for overfitness
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__author__ = 'Abdulrahman Semrie<[email protected]>' | ||
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from crossval.filters.base_filter import BaseFilter | ||
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class AccuracyFilter(BaseFilter): | ||
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def cut_off(self, models, value): | ||
return list(filter(lambda k : k.train_score.accuracy - k.test_score.accuracy <= value, models)) | ||
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class PrecisionFilter(BaseFilter): | ||
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def cut_off(self, models, value): | ||
return list(filter(lambda k : k.train_score.precision - k.test_score.precision <= value, models)) | ||
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class RecallFilter(BaseFilter): | ||
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def cut_off(self, models, value): | ||
return list(filter(lambda k : k.train_score.recall - k.test_score.recall <= value, models)) | ||
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class F1Score(BaseFilter): | ||
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def cut_off(self, models, value): | ||
return list(filter(lambda k : k.train_score.f1_score - k.test_score.f1_score <= value, models)) | ||
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class PValue(BaseFilter): | ||
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def cut_off(self, models, value): | ||
return list(filter(lambda k : k.train_score.p_value - k.test_score.p_value <= value, models)) |
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__author__ = 'Abdulrahman Semrie<[email protected]>' | ||
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import pymongo | ||
from config import MONGODB_URI, DB_NAME, DATASET_DIR | ||
import os | ||
import pathlib | ||
import pandas as pd | ||
from crossval.filters import loader | ||
from models.objmodel import Score, MosesModel | ||
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class PostProcess: | ||
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def __init__(self, filter_type, filter_value, mnemonic): | ||
self.filter_type = filter_type | ||
self.filter_value = filter_value | ||
self.mnemonic = mnemonic | ||
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self.data_frame = None | ||
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self.session = None | ||
self.models = [] | ||
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def _retrieve_folds(self, base_dir): | ||
swd = os.path.join(base_dir, f"session_{self.mnemonic}") | ||
assert os.path.exists(swd) | ||
path = pathlib.Path(swd) | ||
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for fold_file in path.glob("fold_[0-9].csv"): | ||
if self.data_frame is None: | ||
self.data_frame = pd.read_csv(str(fold_file.absolute())) | ||
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else: | ||
self.data_frame = self.data_frame.append(pd.read_csv(str(fold_file.absolute()))) | ||
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def _folds_to_models(self): | ||
for i, row in self.data_frame.iterrows(): | ||
model = MosesModel(row["model"], row['complexity']) | ||
model.test_score = Score(row["recall_test"], row["precision_test"], row["accuracy_test"], row["f1_test"], row["p_value_test"]) | ||
model.train_score = Score(row["recall_train"], row["precision_train"], row["accuracy_train"], row["f1_train"], row["p_value_train"]) | ||
self.models.append(model) | ||
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def filter_models(self, base_dir=DATASET_DIR): | ||
self._retrieve_folds(base_dir) | ||
self._folds_to_models() | ||
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filtered_models = [] | ||
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filter_cls = loader.get_overfitness_filter(self.filter_type) | ||
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if filter_cls is not None: | ||
filtered_models = filter_cls.cut_off(self.models, self.filter_value) | ||
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return list(map(lambda m: m.__dict__(), filtered_models)) |
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@@ -16,4 +16,5 @@ pymongo | |
pyyaml | ||
redis | ||
scikit-learn | ||
scipy | ||
scipy | ||
jsonpickle |
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model,complexity,recall_test,precision_test,accuracy_test,f1_test,p_value_test,recall_train,precision_train,accuracy_train,f1_train,p_value_train | ||
or(and(!$ABTB1 !$ACOX2 !$AGMAT !$AMN) and($ABTB1 $ACOX2)),6,0.5,0.6666666666666666,0.6129032258064516,0.5714285714285715,0.3876953125000001,0.8235294117647058,0.8484848484848485,0.8405797101449275,0.8358208955223881,0.00012829517819532143 | ||
and(or(and(!$AGMAT $AMN) $ACOX2) $ABTB1),4,0.375,0.75,0.6129032258064516,0.5,0.2890624999999999,0.7941176470588235,0.84375,0.8260869565217391,0.8181818181818182,0.0002053757361412177 | ||
and($ABTB1 $ACOX2),2,0.375,0.75,0.6129032258064516,0.5,0.2890624999999999,0.7352941176470589,0.8620689655172413,0.8115942028985508,0.7936507936507937,0.00020408400998040742 | ||
or(and(!$ABTB1 !$AGMAT !$AMN) and($ABTB1 $ACOX2)),5,0.625,0.6666666666666666,0.6451612903225806,0.6451612903225806,0.30175781250000017,0.8529411764705882,0.8055555555555556,0.8260869565217391,0.8285714285714286,0.0004652581580710503 | ||
or(and($ABTB1 $ACOX2) and(!$ACOX2 !$AGMAT !$AMN)),5,0.5625,0.6923076923076923,0.6451612903225806,0.6206896551724138,0.26684570312499983,0.8529411764705882,0.8055555555555556,0.8260869565217391,0.8285714285714286,0.0004652581580710503 | ||
and(or($ACOX2 !$AGMAT) $ABTB1),3,0.4375,0.7777777777777778,0.6451612903225806,0.56,0.17968750000000003,0.8235294117647058,0.8,0.8115942028985508,0.8115942028985507,0.0007232327164301936 | ||
or(and($ABTB1 $ACOX2) and($ABTB1 !$AGMAT) and(!$AGMAT !$AMN)),6,0.6875,0.6875,0.6774193548387096,0.6875,0.21011352539062492,0.9411764705882353,0.7619047619047619,0.8260869565217391,0.8421052631578947,0.0011937454448720044 | ||
and(or(and($AGMAT !$AMN) $ABTB1) $ACOX2),4,0.4375,0.7777777777777778,0.6451612903225806,0.56,0.17968750000000003,0.7647058823529411,0.8387096774193549,0.8115942028985508,0.7999999999999999,0.00032801631501352865 | ||
or(and($ABTB1 $ACOX2) and(!$AGMAT !$AMN)),4,0.6875,0.6875,0.6774193548387096,0.6875,0.21011352539062492,0.8823529411764706,0.7692307692307693,0.8115942028985508,0.8219178082191781,0.0013621046715842056 | ||
and($ACOX2 !$AMN),2,0.4375,0.875,0.6774193548387096,0.5833333333333334,0.0703125,0.7058823529411765,0.8571428571428571,0.7971014492753623,0.7741935483870968,0.0003298385207779936 | ||
or(and(!$ABTB1 !$ACOX2 !$AGMAT) and($ABTB1 $ACOX2)),5,0.5,0.5714285714285714,0.5483870967741935,0.5333333333333333,0.7905273437500004,0.8235294117647058,0.8,0.8115942028985508,0.8115942028985507,0.0007232327164301936 | ||
and(or(and(or(!$ABTB1 $ACOX2) !$AGMAT) $ACOX2) $ABTB1),5,0.375,0.75,0.6129032258064516,0.5,0.2890624999999999,0.7352941176470589,0.8620689655172413,0.8115942028985508,0.7936507936507937,0.00020408400998040742 | ||
and(or(and(or(!$ABTB1 $ACOX2) $AMN) $ACOX2) $ABTB1),5,0.375,0.75,0.6129032258064516,0.5,0.2890624999999999,0.7352941176470589,0.8620689655172413,0.8115942028985508,0.7936507936507937,0.00020408400998040742 | ||
or(and($ABTB1 $ACOX2) and(!$ACOX2 !$AGMAT !$AMN) and($ACOX2 $AGMAT !$AMN)),8,0.625,0.7142857142857143,0.6774193548387096,0.6666666666666666,0.17956542968750003,0.8823529411764706,0.7894736842105263,0.8260869565217391,0.8333333333333333,0.0006576543953178447 | ||
and(or(and($ACOX2 !$AMN) and(!$AGMAT $AMN)) $ABTB1),5,0.375,1.0,0.6774193548387096,0.5454545454545454,0.03125,0.7352941176470589,0.9259259259259259,0.8405797101449275,0.819672131147541,2.2967108733407456e-05 | ||
and(or(!$AGMAT !$AMN) $ABTB1 $ACOX2),4,0.375,1.0,0.6774193548387096,0.5454545454545454,0.03125,0.6764705882352942,0.9583333333333334,0.8260869565217391,0.7931034482758621,2.9802322387695312e-06 | ||
and(or(and($ACOX2 !$AMN) !$AGMAT) $ABTB1),4,0.4375,1.0,0.7096774193548387,0.6086956521739131,0.015625,0.7647058823529411,0.8666666666666667,0.8260869565217391,0.8125,0.00012604645012081412 | ||
and(or(and(or($ABTB1 $AGMAT) $ACOX2 !$AMN) and(!$AGMAT $AMN)) $ABTB1),7,0.375,1.0,0.6774193548387096,0.5454545454545454,0.03125,0.7352941176470589,0.9259259259259259,0.8405797101449275,0.819672131147541,2.2967108733407456e-05 | ||
or(and($ABTB1 !$AGMAT $AMN) and($ACOX2 !$AMN)),5,0.5625,0.9,0.7419354838709677,0.6923076923076923,0.021484374999999997,0.7941176470588235,0.84375,0.8260869565217391,0.8181818181818182,0.0002053757361412177 | ||
and($ABTB1 $ACOX2 !$AMN),3,0.25,1.0,0.6129032258064516,0.4,0.125,0.6470588235294118,0.9565217391304348,0.8115942028985508,0.7719298245614036,5.722045898437501e-06 | ||
and(or(and(or($ABTB1 $AGMAT) $ACOX2 !$AMN) !$AGMAT) $ABTB1),6,0.4375,1.0,0.7096774193548387,0.6086956521739131,0.015625,0.7647058823529411,0.8666666666666667,0.8260869565217391,0.8125,0.00012604645012081412 | ||
and(or(and(or($ABTB1 $AMN) !$AGMAT) !$AMN) $ABTB1 $ACOX2),6,0.375,1.0,0.6774193548387096,0.5454545454545454,0.03125,0.6764705882352942,0.9583333333333334,0.8260869565217391,0.7931034482758621,2.9802322387695312e-06 | ||
and(or(and(or($ACOX2 $AGMAT) !$AMN) !$AGMAT) $ABTB1 $ACOX2),6,0.375,1.0,0.6774193548387096,0.5454545454545454,0.03125,0.6764705882352942,0.9583333333333334,0.8260869565217391,0.7931034482758621,2.9802322387695312e-06 | ||
and(or(and(!$ACOX2 !$AGMAT $AMN) and($ACOX2 !$AMN)) $ABTB1),6,0.25,1.0,0.6129032258064516,0.4,0.125,0.7058823529411765,0.9230769230769231,0.8260869565217391,0.8000000000000002,3.8144777827131e-05 | ||
and(or(and(or($ABTB1 $AMN) !$AGMAT) and($ACOX2 !$AMN)) $ABTB1),6,0.4375,1.0,0.7096774193548387,0.6086956521739131,0.015625,0.7647058823529411,0.8666666666666667,0.8260869565217391,0.8125,0.00012604645012081412 | ||
and(or($ABTB1 $AGMAT) $ACOX2 !$AMN),4,0.3125,1.0,0.6451612903225806,0.47619047619047616,0.0625,0.6764705882352942,0.92,0.8115942028985508,0.7796610169491526,6.334248366623988e-05 | ||
and(or(and($ABTB1 !$AGMAT) !$AMN) $ACOX2),4,0.5625,0.9,0.7419354838709677,0.6923076923076923,0.021484374999999997,0.7352941176470589,0.8620689655172413,0.8115942028985508,0.7936507936507937,0.00020408400998040742 | ||
or(and($ABTB1 !$AGMAT) and($ACOX2 !$AMN)),4,0.625,0.9090909090909091,0.7741935483870968,0.7407407407407406,0.011718750000000002,0.8235294117647058,0.8,0.8115942028985508,0.8115942028985507,0.0007232327164301936 | ||
and(or(and(or($ACOX2 $AGMAT) !$AMN) and(!$AGMAT $AMN)) $ABTB1 $ACOX2),7,0.375,1.0,0.6774193548387096,0.5454545454545454,0.03125,0.6764705882352942,0.9583333333333334,0.8260869565217391,0.7931034482758621,2.9802322387695312e-06 |
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@@ -0,0 +1,29 @@ | ||
model,complexity,recall_test,precision_test,accuracy_test,f1_test,p_value_test,recall_train,precision_train,accuracy_train,f1_train,p_value_train | ||
and(or($AGFG2 !$ANKRD46) $ADAM19),3,0.5,0.5714285714285714,0.5483870967741935,0.5333333333333333,0.7905273437500004,0.8235294117647058,0.9032258064516129,0.8695652173913043,0.8615384615384616,1.6286575766479503e-05 | ||
and(or(and(!$ANKRD46 !$AQP3) $AGFG2) $ADAM19),4,0.4375,0.5833333333333334,0.5483870967741935,0.5,0.7744140625000003,0.7941176470588235,0.9310344827586207,0.8695652173913043,0.8571428571428571,8.323556199256734e-06 | ||
or(and($ADAM19 $AGFG2) and(!$ANKRD46 !$AQP3)),4,0.75,0.6666666666666666,0.6774193548387096,0.7058823529411765,0.23788452148437486,0.9117647058823529,0.8378378378378378,0.8695652173913043,0.8732394366197184,7.960847730812074e-05 | ||
and(or(and(or($ADAM19 $AQP3) !$ANKRD46) $AGFG2) $ADAM19),5,0.5,0.5714285714285714,0.5483870967741935,0.5333333333333333,0.7905273437500004,0.8235294117647058,0.9032258064516129,0.8695652173913043,0.8615384615384616,1.6286575766479503e-05 | ||
and(or(and(or(!$AGFG2 $AQP3) !$ANKRD46) $AGFG2) $ADAM19),5,0.5,0.5714285714285714,0.5483870967741935,0.5333333333333333,0.7905273437500004,0.8235294117647058,0.9032258064516129,0.8695652173913043,0.8615384615384616,1.6286575766479503e-05 | ||
and(or(and(or($ANKRD46 $AQP3) $AGFG2) !$ANKRD46) $ADAM19),5,0.5,0.5714285714285714,0.5483870967741935,0.5333333333333333,0.7905273437500004,0.8235294117647058,0.9032258064516129,0.8695652173913043,0.8615384615384616,1.6286575766479503e-05 | ||
or(and(or($ADAM19 !$AQP3) $AGFG2) and($ADAM19 !$AGFG2 !$ANKRD46)),6,0.625,0.5882352941176471,0.5806451612903226,0.6060606060606061,0.629058837890625,0.9117647058823529,0.8378378378378378,0.8695652173913043,0.8732394366197184,7.960847730812074e-05 | ||
and(or(and($AGFG2 !$AQP3) $ADAM19) !$ANKRD46),4,0.5625,0.6,0.5806451612903226,0.5806451612903225,0.6072387695312501,0.8529411764705882,0.8529411764705882,0.855072463768116,0.8529411764705882,7.997751280618724e-05 | ||
and(or(and($AGFG2 !$AQP3) !$ANKRD46) $ADAM19),4,0.4375,0.5833333333333334,0.5483870967741935,0.5,0.7744140625000003,0.7941176470588235,0.9,0.855072463768116,0.84375,2.6785223425411068e-05 | ||
and(or(and($AGFG2 $AQP3) !$ANKRD46) $ADAM19),4,0.5,0.5714285714285714,0.5483870967741935,0.5333333333333333,0.7905273437500004,0.7941176470588235,0.9,0.855072463768116,0.84375,2.6785223425411068e-05 | ||
or(and($ADAM19 !$ANKRD46) and($AGFG2 !$AQP3)),4,0.5625,0.6,0.5806451612903226,0.5806451612903225,0.6072387695312501,0.8823529411764706,0.8333333333333334,0.855072463768116,0.8571428571428571,0.00012641846373680533 | ||
or(and(or($ADAM19 !$AQP3) $AGFG2) and(or(!$AGFG2 $AQP3) $ADAM19 !$ANKRD46)),7,0.625,0.5882352941176471,0.5806451612903226,0.6060606060606061,0.629058837890625,0.9117647058823529,0.8378378378378378,0.8695652173913043,0.8732394366197184,7.960847730812074e-05 | ||
and($ADAM19 !$ANKRD46),2,0.4375,0.5833333333333334,0.5483870967741935,0.5,0.7744140625000003,0.7647058823529411,0.896551724137931,0.8405797101449275,0.8253968253968255,4.402038910988803e-05 | ||
and(or(and(or(!$ANKRD46 $AQP3) $AGFG2) !$ANKRD46) $ADAM19),5,0.5,0.5714285714285714,0.5483870967741935,0.5333333333333333,0.7905273437500004,0.7941176470588235,0.9,0.855072463768116,0.84375,2.6785223425411068e-05 | ||
and(or(and($AGFG2 $AQP3) and(!$ANKRD46 !$AQP3)) $ADAM19),5,0.4375,0.5833333333333334,0.5483870967741935,0.5,0.7744140625000003,0.7647058823529411,0.9285714285714286,0.855072463768116,0.8387096774193549,1.382694240651702e-05 | ||
and($ADAM19 !$ANKRD46),2,0.4375,0.5833333333333334,0.5483870967741935,0.5,0.7744140625000003,0.7647058823529411,0.896551724137931,0.8405797101449275,0.8253968253968255,4.402038910988803e-05 | ||
and(or(and(or($AGFG2 $ANKRD46) !$AQP3) $ADAM19) !$ANKRD46),5,0.5625,0.6,0.5806451612903226,0.5806451612903225,0.6072387695312501,0.8529411764705882,0.8529411764705882,0.855072463768116,0.8529411764705882,7.997751280618724e-05 | ||
and(or($AGFG2 !$AQP3) $ADAM19 !$ANKRD46),4,0.375,0.6,0.5483870967741935,0.4615384615384615,0.7539062500000002,0.7352941176470589,0.9259259259259259,0.8405797101449275,0.819672131147541,2.2967108733407456e-05 | ||
and($ADAM19 $AGFG2),2,0.4375,0.6363636363636364,0.5806451612903226,0.5185185185185185,0.548828125,0.7058823529411765,0.9230769230769231,0.8260869565217391,0.8000000000000002,3.8144777827131e-05 | ||
and(or(and(or($AGFG2 $ANKRD46) !$AQP3) !$ANKRD46) $ADAM19),5,0.5,0.6153846153846154,0.5806451612903226,0.5517241379310345,0.5810546875,0.7941176470588235,0.8709677419354839,0.8405797101449275,0.8307692307692308,7.772240795323116e-05 | ||
and(or(and(or($AGFG2 !$ANKRD46) $ADAM19) and(or($AGFG2 $ANKRD46) !$ADAM19 !$AQP3)) !$ANKRD46),8,0.5625,0.6,0.5806451612903226,0.5806451612903225,0.6072387695312501,0.8529411764705882,0.8529411764705882,0.855072463768116,0.8529411764705882,7.997751280618724e-05 | ||
$ADAM19,1,0.5625,0.5294117647058824,0.5161290322580645,0.5454545454545455,0.9999999999999998,0.8529411764705882,0.7837837837837838,0.8115942028985508,0.8169014084507041,0.001009090988096044 | ||
and(or(and(!$AGFG2 !$AQP3) $ADAM19) !$ANKRD46),4,0.625,0.6666666666666666,0.6451612903225806,0.6451612903225806,0.30175781250000017,0.7941176470588235,0.84375,0.8260869565217391,0.8181818181818182,0.0002053757361412177 | ||
and(or(and(!$AGFG2 !$AQP3) !$ANKRD46) $ADAM19),4,0.5,0.6153846153846154,0.5806451612903226,0.5517241379310345,0.5810546875,0.7647058823529411,0.8666666666666667,0.8260869565217391,0.8125,0.00012604645012081412 | ||
and(or(and(or($ADAM19 $AGFG2) or($AGFG2 $ANKRD46) !$AQP3) !$ANKRD46) $ADAM19),7,0.5,0.6153846153846154,0.5806451612903226,0.5517241379310345,0.5810546875,0.7941176470588235,0.8709677419354839,0.8405797101449275,0.8307692307692308,7.772240795323116e-05 | ||
or(and(or($ADAM19 $AGFG2) or($AGFG2 $ANKRD46) !$AQP3) and($ADAM19 !$ANKRD46)),7,0.625,0.625,0.6129032258064516,0.625,0.45449829101562506,0.8823529411764706,0.8108108108108109,0.8405797101449275,0.8450704225352113,0.0002982932471420178 | ||
and(or(and(or($ADAM19 $AGFG2) !$ANKRD46) and(or($AGFG2 $ANKRD46) !$AQP3)) $ADAM19),7,0.5,0.6153846153846154,0.5806451612903226,0.5517241379310345,0.5810546875,0.7941176470588235,0.8709677419354839,0.8405797101449275,0.8307692307692308,7.772240795323116e-05 | ||
and(or(and(or($AGFG2 $ANKRD46) !$AQP3) and($ADAM19 !$ANKRD46)) or($ADAM19 $AGFG2)),7,0.625,0.625,0.6129032258064516,0.625,0.45449829101562506,0.8823529411764706,0.8108108108108109,0.8405797101449275,0.8450704225352113,0.0002982932471420178 |
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model,complexity,recall_test,precision_test,accuracy_test,f1_test,p_value_test,recall_train,precision_train,accuracy_train,f1_train,p_value_train | ||
and(or(and(!$AMN $APLNR) $AK4) $ACOX2),4,0.625,0.7692307692307693,0.7096774193548387,0.6896551724137931,0.09228515625000003,0.7941176470588235,0.7941176470588235,0.7971014492753623,0.7941176470588235,0.0011201348827110807 | ||
and(!$AMN $APLNR),2,0.5,0.7272727272727273,0.6451612903225806,0.5925925925925926,0.22656250000000003,0.7058823529411765,0.8275862068965517,0.782608695652174,0.7619047619047619,0.0008302254277448881 | ||
and(or($AK4 !$AMN) $ACOX2),3,0.625,0.7142857142857143,0.6774193548387096,0.6666666666666666,0.17956542968750003,0.7941176470588235,0.7714285714285715,0.782608695652174,0.782608695652174,0.0023457869795667934 | ||
and(or($AK4 $APLNR) $ACOX2),3,0.6875,0.7857142857142857,0.7419354838709677,0.7333333333333334,0.05737304687500002,0.7941176470588235,0.7714285714285715,0.782608695652174,0.782608695652174,0.0023457869795667934 | ||
or(and($ACOX2 $APLNR) and($AK4 !$AMN)),4,0.8125,0.6842105263157895,0.7096774193548387,0.742857142857143,0.16706848144531244,0.8823529411764706,0.8333333333333334,0.855072463768116,0.8571428571428571,0.00012641846373680533 | ||
and(or($ACOX2 $AK4) !$AMN),3,0.6875,0.6875,0.6774193548387096,0.6875,0.21011352539062492,0.7647058823529411,0.896551724137931,0.8405797101449275,0.8253968253968255,4.402038910988803e-05 | ||
or(and($ACOX2 $AK4) and($ACOX2 $APLNR) and($AK4 !$AMN)),6,0.8125,0.6842105263157895,0.7096774193548387,0.742857142857143,0.16706848144531244,0.9117647058823529,0.7948717948717948,0.8405797101449275,0.8493150684931507,0.000426982234989981 | ||
or(and($ACOX2 !$AMN) and($ACOX2 $APLNR) and($AK4 !$AMN)),6,0.8125,0.65,0.6774193548387096,0.7222222222222223,0.2631759643554687,0.8823529411764706,0.8108108108108109,0.8405797101449275,0.8450704225352113,0.0002982932471420178 | ||
or(and($ACOX2 $APLNR) and($AK4 !$AMN) and($AK4 $APLNR)),6,0.9375,0.6521739130434783,0.7096774193548387,0.7692307692307693,0.21003961563110343,0.8823529411764706,0.8108108108108109,0.8405797101449275,0.8450704225352113,0.0002982932471420178 |
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