[FEATURE] Gutters for Swarmplots #41
Annotations
9 warnings
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/2OZOh/src/utilities/utilities.jl#L46
failed to run `@example` block in src/algorithms.md:13-23
```@example all_algorithms
algorithms = [NoBeeswarm() SimpleBeeswarm() WilkinsonBeeswarm(); UniformJitter() PseudorandomJitter() QuasirandomJitter()]
fig = Figure(; size = (800, 450))
xs = rand(1:3, 400); ys = randn(400)
ax_plots = [beeswarm(fig[Tuple(idx)...], xs, ys; color = xs, algorithm = algorithms[idx], markersize = 3, axis = (; title = string(algorithms[idx]))) for idx in CartesianIndices(algorithms)]
jitter_plots = getproperty.(ax_plots[2, :], :plot)
setproperty!.(jitter_plots, :markersize, 7)
setproperty!.(jitter_plots, :alpha, 0.3)
Makie.update_state_before_display!(fig)
fig
```
exception =
UndefVarError: `NoBeeswarm` not defined
Stacktrace:
[1] top-level scope
@ algorithms.md:14
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752
|
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/2OZOh/src/utilities/utilities.jl#L46
failed to run `@example` block in src/examples.md:9-14
```@example examples
using CairoMakie, SwarmMakie
xs = rand(1:4, 500)
ys = randn(500) .+ xs
fig, ax, plt = beeswarm(xs, ys, color = xs, colormap = :isoluminant_cm_70_c39_n256)
```
exception =
BoundsError: attempt to access 500-element Vector{Point{2, Float32}} at index [501]
Stacktrace:
[1] setindex!
@ ./array.jl:1021 [inlined]
[2] (::SwarmMakie.var"#8#14"{Observable{Vector{Point{2, Float32}}}, Observable{Vector{Point{2, Float32}}}, Float64, Float64, Scene})(positions::Vector{Point{2, Float32}}, algorithm::SimpleBeeswarm, colors::Vector{Int64}, markersize::Int64, side::Symbol, direction::Symbol, ::Bool)
@ SwarmMakie ~/work/SwarmMakie.jl/SwarmMakie.jl/src/recipe.jl:159
[3] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::@kwargs{})
@ Base ./essentials.jl:892
[4] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base ./essentials.jl:889
[5] (::Observables.OnAny)(value::Any)
@ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:420
[6] #invokelatest#2
@ ./essentials.jl:892 [inlined]
[7] invokelatest
@ ./essentials.jl:889 [inlined]
[8] notify
@ ~/.julia/packages/Observables/YdEbO/src/Observables.jl:206 [inlined]
[9] plot!(plot::Plot{SwarmMakie.beeswarm, Tuple{Vector{Point{2, Float32}}}})
@ SwarmMakie ~/work/SwarmMakie.jl/SwarmMakie.jl/src/recipe.jl:191
[10] connect_plot!(parent::Scene, plot::Plot{SwarmMakie.beeswarm, Tuple{Vector{Point{2, Float32}}}})
@ Makie ~/.julia/packages/Makie/VRavR/src/interfaces.jl:260
[11] plot!
@ ~/.julia/packages/Makie/VRavR/src/interfaces.jl:265 [inlined]
[12] plot!(ax::Axis, plot::Plot{SwarmMakie.beeswarm, Tuple{Vector{Point{2, Float32}}}})
@ Makie ~/.julia/packages/Makie/VRavR/src/figureplotting.jl:316
[13] plot!(fa::Makie.FigureAxis, plot::Plot{SwarmMakie.beeswarm, Tuple{Vector{Point{2, Float32}}}})
@ Makie ~/.julia/packages/Makie/VRavR/src/figureplotting.jl:313
[14] _create_plot(::Function, ::Dict{Symbol, Any}, ::Vector{Int64}, ::Vararg{Any})
@ Makie ~/.julia/packages/Makie/VRavR/src/figureplotting.jl:250
[15] beeswarm(::Vector{Int64}, ::Vararg{Any}; kw::@kwargs{color::Vector{Int64}, colormap::Symbol})
@ SwarmMakie ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:175
[16] top-level scope
@ examples.md:13
[17] eval
@ ./boot.jl:385 [inlined]
[18] #58
@ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined]
[19] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[20] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753
[21] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[22] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[23] with_logger
@ ./logging.jl:627 [inlined]
[24] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[25] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752
|
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/2OZOh/src/utilities/utilities.jl#L46
failed to run `@example` block in src/examples.md:18-20
```@example examples
plt.colormap[] = Makie.Categorical(Makie.wong_colors()[1:4])
```
exception =
UndefVarError: `plt` not defined
Stacktrace:
[1] top-level scope
@ examples.md:19
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752
|
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/2OZOh/src/utilities/utilities.jl#L46
failed to run `@example` block in src/examples.md:12-14
```@example examples
fig
```
exception =
UndefVarError: `fig` not defined
Stacktrace:
[1] top-level scope
@ :0
[2] eval
@ ./boot.jl:385 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[8] with_logger
@ ./logging.jl:627 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752
|
Run julia-actions/julia-docdeploy@v1:
src/recipe.jl#L168
Gutter threshold exceeded for category 1.0; consider adjusting gutter size
|
Run julia-actions/julia-docdeploy@v1:
src/recipe.jl#L168
Gutter threshold exceeded for category 1.0; consider adjusting gutter size
|
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/2OZOh/src/utilities/utilities.jl#L46
failed to run `@example` block in src/introduction.md:17-24
```@example quickstart
using CairoMakie, SwarmMakie
xs = rand(1:3, 40)
ys = randn(40)
f, a, p = scatter(xs, ys; color = xs, axis = (; title = "Scatter plot"))
beeswarm(f[1, 2], xs, ys; color = xs, algorithm = SimpleBeeswarm(), axis = (; title = "Beeswarm plot"))
f
```
exception =
BoundsError: attempt to access 40-element Vector{Point{2, Float32}} at index [41]
Stacktrace:
[1] setindex!
@ ./array.jl:1021 [inlined]
[2] (::SwarmMakie.var"#8#14"{Observable{Vector{Point{2, Float32}}}, Observable{Vector{Point{2, Float32}}}, Float64, Float64, Scene})(positions::Vector{Point{2, Float32}}, algorithm::SimpleBeeswarm, colors::Vector{Int64}, markersize::Int64, side::Symbol, direction::Symbol, ::Bool)
@ SwarmMakie ~/work/SwarmMakie.jl/SwarmMakie.jl/src/recipe.jl:159
[3] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::@kwargs{})
@ Base ./essentials.jl:892
[4] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base ./essentials.jl:889
[5] (::Observables.OnAny)(value::Any)
@ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:420
[6] #invokelatest#2
@ ./essentials.jl:892 [inlined]
[7] invokelatest
@ ./essentials.jl:889 [inlined]
[8] notify
@ ~/.julia/packages/Observables/YdEbO/src/Observables.jl:206 [inlined]
[9] plot!(plot::Plot{SwarmMakie.beeswarm, Tuple{Vector{Point{2, Float32}}}})
@ SwarmMakie ~/work/SwarmMakie.jl/SwarmMakie.jl/src/recipe.jl:191
[10] connect_plot!(parent::Scene, plot::Plot{SwarmMakie.beeswarm, Tuple{Vector{Point{2, Float32}}}})
@ Makie ~/.julia/packages/Makie/VRavR/src/interfaces.jl:260
[11] plot!
@ ~/.julia/packages/Makie/VRavR/src/interfaces.jl:265 [inlined]
[12] plot!(ax::Axis, plot::Plot{SwarmMakie.beeswarm, Tuple{Vector{Point{2, Float32}}}})
@ Makie ~/.julia/packages/Makie/VRavR/src/figureplotting.jl:316
[13] _create_plot(::Function, ::Dict{Symbol, Any}, ::GridPosition, ::Vararg{Any})
@ Makie ~/.julia/packages/Makie/VRavR/src/figureplotting.jl:250
[14] beeswarm(::GridPosition, ::Vararg{Any}; kw::@kwargs{color::Vector{Int64}, algorithm::SimpleBeeswarm, axis::@NamedTuple{title::String}})
@ SwarmMakie ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:175
[15] top-level scope
@ introduction.md:22
[16] eval
@ ./boot.jl:385 [inlined]
[17] #58
@ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined]
[18] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[19] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753
[20] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[21] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[22] with_logger
@ ./logging.jl:627 [inlined]
[23] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[24] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752
|
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/DocumenterVitepress/VqcRm/src/vitepress_config.jl#L34
DocumenterVitepress: Did not detect `docs/src/.vitepress/config.mts` file. Substituting in the default file.
|
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
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