#paslincs R package ##About The package implements the pathway activity signatures from LINCS data (pasLINCS) methodology for analysis of signaling pathways targeted by a perturbation. The paper describing the methodology can found here. The package is distribute under MIT open source license (see LICENSE file). The example code for using the package is provided in the Workflow_pasLINCS_UseCaseI.Rmd RStudio notebook. The knitted result of the notebook can be viewed here.
First make sure the R package "devtool" is installed, then the following two lines running in R will install the "paslincs" package:
library(devtools)
install_github("uc-bd2k/paslincs")
Please refer to the .Rmd file in this repository "Workflow_pasLINCS_UseCaseI.Rmd" for the illustration of using "paslincs" package.