Add vignette on potential discrepancies between simtrial and survdiff #308
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Closes #290
In the survival (base R) package the log-rank and Cox estimation procedures apply (by default) a correction to "fix" roundoff errors. These are implemented with the
timefix
option (by defaulttimefix = TRUE
) via theaeqSurv()
function.However in the simtrial package (and also Hmisc) such a correction is not implemented; Consequently, there can be discrepancies between simtrial and base R survival (
survdiff()
,coxph()
, andsurvfit()
).In the following we describe a simulation scenario where a discrepancy is generated and illustrate how discrepancies can be resolved (if desired) by pre-processing survival times with aeqSurv and thus replicating
survdiff()
andcoxph()
default calculations.