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Add test data for CheckM #342

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merged 2 commits into from
Dec 11, 2024
Merged

Add test data for CheckM #342

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5414902
added format 1 test data
harper357 Nov 25, 2024
cf4762c
added second log file in format 2 & with tabs
harper357 Nov 25, 2024
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7 changes: 7 additions & 0 deletions data/modules/checkm/format2_tabs_output.txt
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Original file line number Diff line number Diff line change
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Bin Id Marker lineage # genomes # markers # marker sets Completeness Contamination Strain heterogeneity Genome size (bp) # ambiguous bases # scaffolds # contigs N50 (scaffolds) N50 (contigs) Mean scaffold length (bp) Mean contig length (bp) Longest scaffold (bp) Longest contig (bp) GC GC std (scaffolds > 1kbp) Coding density Translation table # predicted genes 0 1 2 3 4 5+
MEGAHIT-MetaBAT2Refined-test_minigut.1_2 k__Bacteria (UID203) 5449 104 58 17.24 0.00 0.00 812495 0 46 46 23272 23272 17662 17662 94357 94357 42.9 3.79 90.23 11 686 93 11 0 0 0 0
MEGAHIT-MetaBAT2Refined-test_minigut.2_2 k__Bacteria (UID203) 5449 104 58 24.14 0.00 0.00 726517 0 127 127 7052 7052 5720 5720 20088 20088 51.9 2.29 88.61 11 756 89 15 0 0 0 0
SPAdes-MaxBin2Refined-test_minigut.001_sub_2 k__Bacteria (UID203) 5449 104 58 20.69 0.00 0.00 895899 0 36 36 58025 58025 24886 24886 257002 257002 43.2 3.45 89.72 11 755 91 13 0 0 0 0
SPAdes-MetaBAT2Refined-test_minigut.2_2 k__Bacteria (UID203) 5449 104 58 24.14 0.00 0.00 775812 0 95 95 11346 11346 8166 8166 33719 33719 51.7 2.38 88.19 11 782 89 15 0 0 0 0


11 changes: 11 additions & 0 deletions data/modules/checkm/output.txt
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Bin Id Marker lineage # genomes # markers # marker sets 0 1 2 3 4 5+ Completeness Contamination Strain heterogeneity
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SPAdes-MetaBAT2Refined-test_minigut.2 k__Bacteria (UID203) 5449 104 58 89 15 0 0 0 0 24.14 0.00 0.00
MEGAHIT-MetaBAT2Refined-test_minigut.2 k__Bacteria (UID203) 5449 104 58 89 15 0 0 0 0 24.14 0.00 0.00
SPAdes-MaxBin2Refined-test_minigut.001_sub k__Bacteria (UID203) 5449 104 58 91 13 0 0 0 0 20.69 0.00 0.00
MEGAHIT-MetaBAT2Refined-test_minigut.1 k__Bacteria (UID203) 5449 104 58 93 11 0 0 0 0 17.24 0.00 0.00
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