PW41_2024_MIT: Add project SkinSurfaceSegmentationForNousnav

PW41_2024_MIT/Projects/SkinSurfaceSegmentationForNousnav/README.md

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+---
+layout: pw41-project
+
+permalink: /:path/
+
+project_title: Skin Surface Segmentation for NousNav
+category: Segmentation / Classification / Landmarking
+presenter_location: In-person
+
+key_investigators:
+
+- name: Reuben Dorent
+  affiliation: Brigham and Women's Hospital
+  country: Harvard Medical School, USA
+
+- name: Colin Galvin
+  affiliation: Brigham and Women's Hospital
+  country: Harvard Medical School, USA
+
+- name: Sarah Frisken
+  affiliation: Brigham and Women's Hospital
+  country: Harvard Medical School, USA
+
+- name: Tina Kapur
+  affiliation: Brigham and Women's Hospital
+  country: Harvard Medical School, USA
+
+- name: Sam Horvath
+  affiliation: Kitware
+  country: USA
+
+---
+
+# Project Description
+
+<!-- Add a short paragraph describing the project. -->
+
+
+This project was initiated during the [PW36](https://projectweek.na-mic.org/PW36_2022_Virtual/Projects/SkinSegmentation/).
+It aims to create an automated skin segmentation tool for pre-operative scans for NousNav.
+
+A model has been already trained to automatically segment scans in multi-parametric MRI. In this project, we aim to integrate the developed tool into Slicer for further integration in NousNav.
+
+
+
+
+## Objective
+
+<!-- Describe here WHAT you would like to achieve (what you will have as end result). -->
+
+
+1. Create a Slicer Extension for automatic skin segmentation based on a pre-trained nnUnet framework
+2. Test the Slicer Extension in different settings, including different OS and different hardware configuration (only CPU, GPU, Mac)
+3. Integrate the Slicer module into NousNav
+
+
+
+
+## Approach and Plan
+
+<!-- Describe here HOW you would like to achieve the objectives stated above. -->
+
+
+1. Leverage the existing SkinSegmentator Slicer extension as template
+2. Create a small database that can be shared to test the algorithm in different settings
+3. Discuss with the NousNav development team for its integration
+
+
+
+
+## Progress and Next Steps
+
+<!-- Update this section as you make progress, describing of what you have ACTUALLY DONE.
+     If there are specific steps that you could not complete then you can describe them here, too. -->
+
+
+_No response_
+
+
+
+# Illustrations
+
+<!-- Add pictures and links to videos that demonstrate what has been accomplished. -->
+
+
+![image](https://raw.githubusercontent.com/ReubenDo/SlicerSkinSegmentator/main/screenshots/example.png)
+
+
+
+# Background and References
+
+<!-- If you developed any software, include link to the source code repository.
+     If possible, also add links to sample data, and to any relevant publications. -->
+
+
+_No response_
+