[138] Add instructions to use Apptainer in Mintrop

NDF-Poli-USP · Jan 23, 2025 · b2f9ed5 · b2f9ed5
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diff --git a/apptainer/README.md b/apptainer/README.md
@@ -38,4 +38,15 @@ apptainer shell --overlay /tmp/ext3_overlay.img -e devimg.sif
 To execute the image in batch mode:
 ````
 apptainer run  --overlay /tmp/ext3_overlay.img -e devimg.sif <script>
-````
+````
+
+### Running on Mintrop
+
+In order to run code with Apptainer on Mintrop, you may add the following lines to your Slurm script:
+````
+module load apptainer
+apptainer overlay create --size 1024 /tmp/ext3_overlay.img
+apptainer run  --overlay /tmp/ext3_overlay.img -e devimg.sif ./example.sh
+````
+
+where the script [example.sh](./example.sh) is provided in this directory to show how spyro code could be called.
diff --git a/apptainer/example.sh b/apptainer/example.sh
@@ -0,0 +1,4 @@
+#!/usr/bin/env bash
+
+. /home/firedrake/firedrake/bin/activate
+python3 -m pytest ../test
diff --git a/docker/README.md b/docker/README.md
@@ -21,8 +21,8 @@ docker run -it runtag:1.0
 
 The Dockerfile may also be used to create a development environment. First, clone the git repository and then build the development image:
 ````
-git clone https://github.com/Olender/spyro-1.git
-cd spyro-1
+git clone git@github.com:NDF-Poli-USP/spyro.git
+cd spyro
 git checkout <your_branch>
 docker build -t devtag:1.0 -f docker/Dockerfile --target spyro_development docker
 ````