Sanity cleanups for scripts/examples #386
Workflow file for this run
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name: Test | |
on: | |
push: | |
branches: # on all branches except `typos` | |
- '**' | |
- '!typos' | |
paths-ignore: | |
- 'docs/**' | |
- 'scripts/**' | |
- 'data/**' | |
- '.git*' | |
- 'README.md' | |
pull_request: | |
branches: | |
- '**' | |
schedule: # Every Monday at 04:00 UTC | |
- cron: '0 4 * * 1' | |
jobs: | |
caching: | |
strategy: | |
matrix: | |
python-version: [ "3.10", "3.11", "3.12" ] | |
os: [ ubuntu-latest ] | |
fail-fast: false | |
defaults: | |
run: | |
shell: bash -elo pipefail {0} | |
name: Cache for ${{ matrix.python-version }} on ${{ matrix.os }} | |
runs-on: ${{ matrix.os }} | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Get week number | |
run: echo "WEEK=$(date +'%V')" >> $GITHUB_ENV | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
create-args: python=${{ matrix.python-version }} | |
environment-file: environment.yml | |
cache-environment: true | |
cache-environment-key: W${{ env.WEEK }} | |
run-tests: | |
needs: caching | |
strategy: | |
matrix: | |
python-version: [ "3.10", "3.11", "3.12" ] | |
os: [ ubuntu-latest ] | |
submodule: | |
- { | |
name: "Metrics & Graph Stats", | |
pytest_args: "tests/metrics/ tests/test_graph_stats.py" } | |
- { name: "Approaches", pytest_args: "tests/partitioning/approaches/" } | |
- { name: "Partitioning Base", pytest_args: "tests/partitioning/test_base.py" } | |
- { | |
name: "Partitioning Rest", | |
pytest_args: "tests/partitioning/ --ignore=tests/partitioning/approaches/ --ignore=tests/partitioning/test_base.py" | |
} | |
- { name: "Population", pytest_args: "tests/population/" } | |
- { name: "Attribute", pytest_args: "tests/test_attribute.py" } | |
- { name: "Plot", pytest_args: "tests/test_plot.py" } | |
- { name: "Utils", pytest_args: "tests/test_utils.py" } | |
fail-fast: false | |
name: ${{ matrix.submodule.name }} (${{ matrix.python-version }} on ${{ matrix.os }}) | |
runs-on: ${{ matrix.os }} | |
defaults: | |
run: | |
shell: bash -el {0} | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Get week number | |
run: echo "WEEK=$(date +'%V')" >> $GITHUB_ENV | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
create-args: python=${{ matrix.python-version }} | |
environment-file: environment.yml | |
cache-environment: true | |
cache-environment-key: W${{ env.WEEK }} | |
- name: Install superblockify | |
run: pip install --no-build-isolation --no-deps -e . | |
- name: "Run tests ${{ matrix.submodule.name }}" | |
if: matrix.python-version != '3.12' || matrix.os != 'ubuntu-latest' | |
run: | | |
pytest ${{ matrix.submodule.pytest_args }} | |
- name: "Run tests ${{ matrix.submodule.name }} with coverage" | |
if: matrix.python-version == '3.12' && matrix.os == 'ubuntu-latest' | |
run: | | |
pytest --cov=superblockify ${{ matrix.submodule.pytest_args }} | |
env: | |
COVERAGE_FILE: ".coverage.${{ matrix.submodule.name }}" | |
- name: Store coverage file | |
if: matrix.python-version == '3.12' && matrix.os == 'ubuntu-latest' | |
uses: actions/upload-artifact@v4 | |
with: | |
name: coverage-${{ matrix.submodule.name }} | |
path: ".coverage.${{ matrix.submodule.name }}" | |
coverage: | |
name: Merge Coverage | |
needs: run-tests | |
runs-on: ubuntu-latest | |
defaults: | |
run: | |
shell: bash -el {0} | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v4 | |
- name: Load coverages | |
uses: actions/download-artifact@v4 | |
id: download | |
with: | |
path: coverage | |
pattern: 'coverage-*' | |
merge-multiple: true | |
- name: Install coverage | |
run: pip install coverage | |
- name: Merge coverage files | |
run: coverage combine coverage/ | |
- name: Upload coverage report to Codecov | |
uses: codecov/codecov-action@v4 | |
env: | |
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |