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+Missing Pointers for Benthic Fluxes in Direct Sinking of Phytoplankton P #19

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merged 2 commits into from
Mar 26, 2024
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+Missing Pointers for Benthic Fluxes in Direct Sinking of Phytoplankton P #19

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01f7a0c
fix benthic flux pointer for pytho p
yichengt900 Mar 25, 2024
6ee5e2a
Add comments for iron sediment flux
yichengt900 Mar 26, 2024
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20 changes: 11 additions & 9 deletions generic_tracers/generic_COBALT.F90
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Original file line number Diff line number Diff line change
Expand Up @@ -7702,10 +7702,10 @@ subroutine generic_COBALT_update_from_bottom(tracer_list, dt, tau, model_time)
!
! Sinking phytoplankton: Iron
!
!> Iron flux to the sediment is removed, and flux from the sediment is
!! handled separately later using a relationship based on Dale et al., 2015.
call g_tracer_get_values(tracer_list,'fedi','btm_reservoir',phyto(DIAZO)%ffe_btm,isd,jsd)
phyto(DIAZO)%ffe_btm = phyto(DIAZO)%ffe_btm/dt
!call g_tracer_get_pointer(tracer_list,'fedi_btf','field',temp_field)
!temp_field(:,:,1) = phyto(DIAZO)%ffe_btm(:,:)
call g_tracer_set_values(tracer_list,'fedi','btm_reservoir',0.0)
if (phyto(DIAZO)%id_ffe_btm .gt. 0) &
used = g_send_data(phyto(DIAZO)%id_ffe_btm,phyto(DIAZO)%ffe_btm, &
Expand All @@ -7714,8 +7714,6 @@ subroutine generic_COBALT_update_from_bottom(tracer_list, dt, tau, model_time)

call g_tracer_get_values(tracer_list,'felg','btm_reservoir',phyto(LARGE)%ffe_btm,isd,jsd)
phyto(LARGE)%ffe_btm = phyto(LARGE)%ffe_btm/dt
!call g_tracer_get_pointer(tracer_list,'felg_btf','field',temp_field)
!temp_field(:,:,1) = phyto(LARGE)%ffe_btm(:,:)
call g_tracer_set_values(tracer_list,'felg','btm_reservoir',0.0)
if (phyto(LARGE)%id_ffe_btm .gt. 0) &
used = g_send_data(phyto(LARGE)%id_ffe_btm,phyto(LARGE)%ffe_btm, &
Expand All @@ -7724,8 +7722,6 @@ subroutine generic_COBALT_update_from_bottom(tracer_list, dt, tau, model_time)

call g_tracer_get_values(tracer_list,'femd','btm_reservoir',phyto(MEDIUM)%ffe_btm,isd,jsd)
phyto(MEDIUM)%ffe_btm = phyto(MEDIUM)%ffe_btm/dt
!call g_tracer_get_pointer(tracer_list,'femd_btf','field',temp_field)
!temp_field(:,:,1) = phyto(MEDIUM)%ffe_btm(:,:)
call g_tracer_set_values(tracer_list,'femd','btm_reservoir',0.0)
if (phyto(MEDIUM)%id_ffe_btm .gt. 0) &
used = g_send_data(phyto(MEDIUM)%id_ffe_btm,phyto(MEDIUM)%ffe_btm, &
Expand All @@ -7734,8 +7730,6 @@ subroutine generic_COBALT_update_from_bottom(tracer_list, dt, tau, model_time)

call g_tracer_get_values(tracer_list,'fesm','btm_reservoir',phyto(SMALL)%ffe_btm,isd,jsd)
phyto(SMALL)%ffe_btm = phyto(SMALL)%ffe_btm/dt
!call g_tracer_get_pointer(tracer_list,'fesm_btf','field',temp_field)
!temp_field(:,:,1) = phyto(SMALL)%ffe_btm(:,:)
call g_tracer_set_values(tracer_list,'fesm','btm_reservoir',0.0)
if (phyto(SMALL)%id_ffe_btm .gt. 0) &
used = g_send_data(phyto(SMALL)%id_ffe_btm,phyto(SMALL)%ffe_btm, &
Expand All @@ -7746,6 +7740,8 @@ subroutine generic_COBALT_update_from_bottom(tracer_list, dt, tau, model_time)
!
call g_tracer_get_values(tracer_list,'pdi','btm_reservoir',phyto(DIAZO)%fp_btm,isd,jsd)
phyto(DIAZO)%fp_btm = phyto(DIAZO)%fp_btm/dt
call g_tracer_get_pointer(tracer_list,'pdi_btf','field',temp_field)
temp_field(:,:,1) = phyto(DIAZO)%fp_btm(:,:)
call g_tracer_set_values(tracer_list,'pdi','btm_reservoir',0.0)
if (phyto(DIAZO)%id_fp_btm .gt. 0) &
used = g_send_data(phyto(DIAZO)%id_fp_btm,phyto(DIAZO)%fp_btm, &
Expand All @@ -7754,6 +7750,8 @@ subroutine generic_COBALT_update_from_bottom(tracer_list, dt, tau, model_time)

call g_tracer_get_values(tracer_list,'plg','btm_reservoir',phyto(LARGE)%fp_btm,isd,jsd)
phyto(LARGE)%fp_btm = phyto(LARGE)%fp_btm/dt
call g_tracer_get_pointer(tracer_list,'plg_btf','field',temp_field)
temp_field(:,:,1) = phyto(LARGE)%fp_btm(:,:)
call g_tracer_set_values(tracer_list,'plg','btm_reservoir',0.0)
if (phyto(LARGE)%id_fp_btm .gt. 0) &
used = g_send_data(phyto(LARGE)%id_fp_btm,phyto(LARGE)%fp_btm, &
Expand All @@ -7762,6 +7760,8 @@ subroutine generic_COBALT_update_from_bottom(tracer_list, dt, tau, model_time)

call g_tracer_get_values(tracer_list,'pmd','btm_reservoir',phyto(MEDIUM)%fp_btm,isd,jsd)
phyto(MEDIUM)%fp_btm = phyto(MEDIUM)%fp_btm/dt
call g_tracer_get_pointer(tracer_list,'pmd_btf','field',temp_field)
temp_field(:,:,1) = phyto(MEDIUM)%fp_btm(:,:)
call g_tracer_set_values(tracer_list,'pmd','btm_reservoir',0.0)
if (phyto(MEDIUM)%id_fp_btm .gt. 0) &
used = g_send_data(phyto(MEDIUM)%id_fp_btm,phyto(MEDIUM)%fp_btm, &
Expand All @@ -7770,6 +7770,8 @@ subroutine generic_COBALT_update_from_bottom(tracer_list, dt, tau, model_time)

call g_tracer_get_values(tracer_list,'psm','btm_reservoir',phyto(SMALL)%fp_btm,isd,jsd)
phyto(SMALL)%fp_btm = phyto(SMALL)%fp_btm/dt
call g_tracer_get_pointer(tracer_list,'psm_btf','field',temp_field)
temp_field(:,:,1) = phyto(SMALL)%fp_btm(:,:)
call g_tracer_set_values(tracer_list,'psm','btm_reservoir',0.0)
if (phyto(SMALL)%id_fp_btm .gt. 0) &
used = g_send_data(phyto(SMALL)%id_fp_btm,phyto(SMALL)%fp_btm, &
Expand Down Expand Up @@ -9900,7 +9902,7 @@ subroutine generic_COBALT_update_from_source(tracer_list,Temp,Salt,rho_dzt,dzt,h

! iron from sediment (Elrod)
!cobalt%ffe_sed(i,j) = cobalt%fe_2_n_sed * cobalt%f_ndet_btf(i,j,1)
! iron from sediment (Dale)
! iron from sediment (Dale, 2015)
cobalt%ffe_sed(i,j) = cobalt%ffe_sed_max * tanh( (cobalt%fntot_btm(i,j)*cobalt%c_2_n*sperd*1.0e3)/ &
max(cobalt%btm_o2(i,j)*1.0e6,epsln) )
cobalt%ffe_geotherm(i,j) = cobalt%ffe_geotherm_ratio*internal_heat(i,j)*4184.0/dt
Expand Down
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