Add marine hybrid envar

[guillaumevernieres]

Description

What the title says.
Main features added:

• A new possible ci test that runs 1.5 cycle of the hybrid envar with the coupled UFS
• yamls to allow running the hybrid envar GFSv17 prototype at c384/0.25 for the det and C192/0.25 for the ens. members
• a few bug and dependency fixes to allow cycling with an ensemble
• an option to turn off the direct insertion of the sea-ice ensemble member analysis/recentering

Issues addressed:

• fixes Fix the marine EnVAR GDASApp#1289
• fixes OCNRES is an integer in the config, not a string. GDASApp#1357

Dependencies:

• We need to stage the ens. memnber IC's at c48/500 Warm coupled restarts for the GFSv17 test #3117
• Marine ens. var. GDASApp#1353
• Bug fixes and changes necessary to run the Ens. var jcb-gdas#46

Type of change

• Bug fix (fixes something broken)
• New feature (adds functionality)
• Maintenance (code refactor, clean-up, new CI test, etc.)

Change characteristics

• Is this a breaking change (a change in existing functionality)? NO
• Does this change require a documentation update? NO
• Does this change require an update to any of the following submodules? YES :
  • GDAS NOT SUBMITTED YET
• Other changes:
  • **requires to stage the low-res ens. IC's ** Issue not submitted yet

How has this been tested?

• Tested a subset of the global-worflow ci on Hercules and Hera at various stages of the development.
• Tested the hybrid ens. var. at C48/5.00 and C384/0.25

Checklist

• Any dependent changes have been merged and published
• My code follows the style guidelines of this project
• I have performed a self-review of my own code
• I have commented my code, particularly in hard-to-understand areas
• I have documented my code, including function, input, and output descriptions
• My changes generate no new warnings
• New and existing tests pass with my changes
• This change is covered by an existing CI test or a new one has been added
• Any new scripts have been added to the .github/CODEOWNERS file with owners
• I have made corresponding changes to the system documentation if necessary

[AndrewEichmann-NOAA]

Suggested change

	gfs_cyc: 0
	interval: 0

[RussTreadon-NOAA]

WCOSS2 (Cactus) C48mx500_3DVarAOWCDA g-w CI

Install guillaumevernieres:feature/marineenvar at 5c1148a on Cactus using GDASApp feature/marineenvar at 71e9e5f for sorc/gdas.cd. Use test version of spack-stack/1.60 to build sorc/gdas.cd

Prior to launching C48mx500_3DVarAOWCDA g-w CI make the following change in working copy of env/WCOSS2.env

@@ -109,17 +109,17 @@ elif [[ "${step}" = "marinebmat" ]]; then
     export APRUNCFP="${launcher} -n \$ncmd --multi-prog"
     export APRUN_MARINEBMAT="${APRUN_default}"
 
-elif [[ "${step}" = "ocnanalrun" ]]; then
+elif [[ "${step}" = "marineanlvar" ]]; then
 
     export APRUNCFP="${launcher} -n \$ncmd --multi-prog"
 
-    export APRUN_OCNANAL="${APRUN_default}"
+    export APRUN_MARINEANLVAR="${APRUN_default}"
 
-elif [[ "${step}" = "ocnanalchkpt" ]]; then
+elif [[ "${step}" = "marineanlchkpt" ]]; then
 
     export APRUNCFP="${launcher} -n \$ncmd --multi-prog"
 
-    export APRUN_OCNANAL="${APRUN_default}"
+    export APRUN_MARINEANLCHKPT="${APRUN_default}"
 
 elif [[ "${step}" = "ocnanalecen" ]]; then

With these changes in place, successfully run C48mx500_3DVarAOWCDA g-w CI

/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/prwcda_pr3041
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202103241200        Done    Oct 31 2024 16:30:16    Oct 31 2024 16:50:22
202103241800        Done    Oct 31 2024 16:30:16    Oct 31 2024 19:23:12

The following marine DA jobs successfully ran

202103241800       gdas_prepoceanobs                   159911150           SUCCEEDED                   0         1         182.0
202103241800      gdas_marineanlinit                   159919020           SUCCEEDED                   0         1          25.0
202103241800         gdas_marinebmat                   159918814           SUCCEEDED                   0         1          38.0
202103241800       gdas_marineanlvar                   159919534           SUCCEEDED                   0         1          70.0
202103241800     gdas_marineanlchkpt                   159920276           SUCCEEDED                   0         1          37.0
202103241800     gdas_marineanlfinal                   159920925           SUCCEEDED                   0         1          32.0

[RussTreadon-NOAA]

Thank you @guillaumevernieres !

[guillaumevernieres]

@AndrewEichmann-NOAA feel free to push your wcoss updates here if there are more (as a PR into my branch).

[aerorahul]

looks good to me.

[WalterKolczynski-NOAA]

Should these comments be removed now?

[WalterKolczynski-NOAA]

I think this needs to be conditional on marine analysis running. As-is it would add a dependency even if we were running without marine turned on at all.

[guillaumevernieres]

Yes, that's the intent @WalterKolczynski-NOAA . Re-centering around the deterministic should happen, with or without the marine DA turned on.
Is efcs used outside of the DA cycling context (atmos or otherwise)?