Clone, build, and run C48_ATM, C48_S2SW, and C96_atm3DVar on Gaea C5 and C6 #3106

DavidBurrows-NCO · 2024-11-15T16:31:08Z

Description

What:
Correct build/run for C48_ATM, C48_S2SW, and C96_atm3DVar on Gaea C5. Add build and run capability for C48_ATM, C48_S2SW, and C96_atm3DVar on Gaea C6.
Why:
After the C5 OS upgrade, submodules no longer built in the global-workflow. This PR correct that and adds build/run capability to C6.

Resolves #3011
Depends on:
ufs-community/ufs-weather-model#2448
ufs-community/UFS_UTILS#995
NOAA-EMC/gfs-utils#87
NOAA-EMC/UPP#1070
NOAA-EMC/GSI#800
NOAA-EMC/GSI-utils#55
NOAA-EMC/GSI-Monitor#146
NOAA-EMC/GDASApp#1361

Type of change

Bug fix (fixes something broken)
New feature (adds functionality)

Change characteristics

Is this a breaking change (a change in existing functionality)? NO
Does this change require a documentation update? NO
Does this change require an update to any of the following submodules? YES (If YES, please add a link to any PRs that are pending.)
- EMC verif-global
- GDAS Update build scripts on Gaea-C5 to conform with ufs-wx-model and global-workflow GDASApp#1361
- GFS-utils Add/fix build capability for Gaea-C5, Gaea-C6, and container gfs-utils#87
- GSI Add/fix build capability for Gaea-C5, Gaea-C6, and container GSI#800
- GSI-monitor Add/fix build capability for Gaea-C5, Gaea-C6, and container GSI-Monitor#146
- GSI-utils Add/fix build capability for Gaea-C5, Gaea-C6, and container GSI-utils#55
- UFS-utils Update scripts to build on both Gaea-C5 and C6 ufs-community/UFS_UTILS#995
- UFS-weather-model Gaea C6 support for UFSWM ufs-community/ufs-weather-model#2448
- wxflow

How has this been tested?

C5 and C6: clone, built, and ran C48_ATM and C48_S2SW successfully.
C96_atm3DVar is hanging in sfcanl jobs.

Checklist

DavidBurrows-NCO · 2024-11-15T16:44:04Z

Hi @aerorahul @WalterKolczynski-NOAA We're still waiting on build merges for some submodules, so I've left this PR in draft. From our conversation Tuesday, I've pointed the submodules that were merged to their respective head of develop and the others to my commit for now. Should I be pointing to my submodule commits instead to limit the number of changes coming into GW? Thanks

jswhit · 2024-11-15T18:41:19Z

sorc/build_all.sh needs the following update:

--- sorc/build_all.sh
+++ sorc/build_all.sh
@@ -149,7 +149,7 @@ build_opts["ww3prepost"]="${_wave_opt} ${_verbose_opt} ${_build_ufs_opt} ${_buil

 # Optional DA builds
 if [[ "${_build_ufsda}" == "YES" ]]; then
-   if [[ "${MACHINE_ID}" != "orion" && "${MACHINE_ID}" != "hera" && "${MACHINE_ID}" != "hercules" && "${MACHINE_ID}" != "wcoss2" && "${MACHINE_ID}" != "noaacloud" && "${MACHINE_ID}" != "gaea" ]]; then
+   if [[ "${MACHINE_ID}" != "orion" && "${MACHINE_ID}" != "hera" && "${MACHINE_ID}" != "hercules" && "${MACHINE_ID}" != "wcoss2" && "${MACHINE_ID}" != "noaacloud" && "${MACHINE_ID}" != "gaeac5" && "${MACHINE_ID}" != "gaeac6" ]]; then
       echo "NOTE: The GDAS App is not supported on ${MACHINE_ID}.  Disabling build."
    else
       build_jobs["gdas"]=8

jswhit · 2024-11-15T18:45:24Z

also ush/load_ufsda_modules.sh needs

--- a/ush/load_ufsda_modules.sh
+++ b/ush/load_ufsda_modules.sh
@@ -34,13 +34,13 @@ source "${HOMEgfs}/ush/module-setup.sh"
 module use "${HOMEgfs}/sorc/gdas.cd/modulefiles"

 case "${MACHINE_ID}" in
-  ("hera" | "orion" | "hercules" | "wcoss2")
+  ("hera" | "orion" | "hercules" | "gaeac5" | "gaeac6" | "wcoss2")
     module load "${MODS}/${MACHINE_ID}"
     ncdump=$( command -v ncdump )
     NETCDF=$( echo "${ncdump}" | cut -d " " -f 3 )
     export NETCDF
     ;;
-  ("jet" | "gaea" | "s4" | "acorn")
+  ("jet" | "s4" | "acorn")
     echo WARNING: UFSDA NOT SUPPORTED ON THIS PLATFORM
     ;;
   *)

DavidBurrows-NCO · 2024-11-15T18:54:35Z

also ush/load_ufsda_modules.sh needs

Thanks @jswhit I pushed changes to ush/load_ufsda_modules.sh and sorc/build_all.sh

jswhit · 2024-11-15T19:16:55Z

also...

workflow/hosts/gaeac6.yaml and gaeac5.yaml:

-QUEUE_SERVICE: normal
+QUEUE_SERVICE: hpss
 PARTITION_BATCH: batch
-PARTITION_SERVICE: batch
+PARTITION_SERVICE: dtn_f5_f6

and modulefiles/module_gwsetup.gaeac6.lua:

-prepend_path("MODULEPATH", "/ncrc/proj/epic/spack-stack/spack-stack-1.6.0/envs/unified-env/install/modulefiles/Core")
+prepend_path("MODULEPATH", "/ncrc/proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/modulefiles/Core")

jswhit · 2024-11-15T19:37:38Z

env/GAEAC5.env and GAEAC6.env seem to be missing a bunch of stuff. I just copied HERCULES.env for both, and made some minor mods (see https://github.com/jswhit2/global-workflow/blob/develop/env/GAEAC5.env)

jswhit · 2024-11-15T20:03:14Z

build_ww3prepost is failing for me on both c5 and c6 (using ufs-wx-model 2448)

DavidBurrows-NCO · 2024-11-15T20:03:31Z

missing a bunch of stuff

@jswhit It's not really missing but intentionally minimized at the request of EMC porting to a new machine. Instead, we started from a nearly blank canvas and have been building up. Currently, the C5 and C6.env files are set up for C48_ATM, C48_S2SW, and C96_atm3DVar jobs. The 3DVarAOWCDA configuration you're running will definitely have some additional jobs. If you send those particular job names (or "step" in the env file). I will add them to the files.

JessicaMeixner-NOAA · 2024-11-18T21:09:36Z

build_ww3prepost is failing for me on both c5 and c6 (using ufs-wx-model 2448)

@jswhit - can you point me to a log file? Maybe I can look and see if something is easy to fix with this.

jswhit · 2024-11-18T21:29:05Z

build_ww3prepost is failing for me on both c5 and c6 (using ufs-wx-model 2448)

@jswhit - can you point me to a log file? Maybe I can look and see if something is easy to fix with this.

@JessicaMeixner-NOAA here is the error:

gpfs/f6/ira-da/proj-shared/Jeffrey.S.Whitaker/global-workflow-jswhit2/sorc/ufs_model.fd/WW3/model/src/w3initmd.F90(451): error #7002: Error in opening the compiled module file.  Check INCLUDE paths.   [WAV_RESTART_MOD]    use wav_restart_mod, only : read_restart
--------^
/gpfs/f6/ira-da/proj-shared/Jeffrey.S.Whitaker/global-workflow-jswhit2/sorc/ufs_model.fd/WW3/model/src/w3initmd.F90(975): error #6632: Keyword arguments are invalid without an explicit interface.   [VA]            call read_restart(trim(fname), va=va, mapsta=mapsta, mapst2=mapst2)
-------------------------------------------^
/gpfs/f6/ira-da/proj-shared/Jeffrey.S.Whitaker/global-workflow-jswhit2/sorc/ufs_model.fd/WW3/model/src/w3initmd.F90(975): error #6632: Keyword arguments are invalid without an explicit interface.   [MAPSTA]
            call read_restart(trim(fname), va=va, mapsta=mapsta, mapst2=mapst2)
--------------------------------------------------^
/gpfs/f6/ira-da/proj-shared/Jeffrey.S.Whitaker/global-workflow-jswhit2/sorc/ufs_model.fd/WW3/model/src/w3initmd.F90(975): error #6632: Keyword arguments are invalid without an explicit interface.   [MAPST2]
            call read_restart(trim(fname), va=va, mapsta=mapsta, mapst2=mapst2)
-----------------------------------------------------------------^
/gpfs/f6/ira-da/proj-shared/Jeffrey.S.Whitaker/global-workflow-jswhit2/sorc/ufs_model.fd/WW3/model/src/w3initmd.F90(451): error #6580: Name in only-list does not exist or is not accessible.   [READ_RESTART]
    use wav_restart_mod, only : read_restart
--------------------------------^
compilation aborted for /gpfs/f6/ira-da/proj-shared/Jeffrey.S.Whitaker/global-workflow-jswhit2/sorc/ufs_model.fd/WW3/model/src/w3initmd.F90 (code 1)

JessicaMeixner-NOAA · 2024-11-18T22:05:43Z

@jswhit - Okay I know what the issue is, but it'll take a minute to get it fixed. The issue crept in with ufs-community/ufs-weather-model#2445 and we didn't catch it. If you go back one-commit of ufs-waether-model, hopefully things will run. We'll get a fix in as soon as possible.

jswhit · 2024-11-19T22:53:59Z

@JessicaMeixner-NOAA I'm seeing this error in the gdas_fcst step on c6 when I run with ufs-wx-model 2448

424:  (abort_ice)ABORTED:
424:  (abort_ice) error =
424:  (construct_filename) ERROR: history filename already used for another history s
424:  tream iceh_inst.2021-03-24-10800.nc

and the traceback looks like this

473: ufs_model.x        0000000005E9CD8B  ice_broadcast_mp_         252  ice_broadcast.F90
473: ufs_model.x        0000000005F055E3  ice_history_write         169  ice_history_write.F90
473: ufs_model.x        0000000005C2A4E2  ice_history_mp_ac        4134  ice_history.F90
473: ufs_model.x        0000000005EE77FC  cice_runmod_mp_ci         367  CICE_RunMod.F90
473: ufs_model.x        0000000005B7DA06  ice_comp_nuopc_mp        1204  ice_comp_nuopc.F90
473: ufs_model.x        0000000000D05438  Unknown               Unknown  Unknown

Do you know of any recenter cice changes that could cause this?

JessicaMeixner-NOAA · 2024-11-19T22:59:43Z

I don't know but I'm not as caught up on all the recent ufs wm changes as I normally am, but taking a quick look at ufs-weather-model says CICE hasn't been updated in 2 months.

jswhit · 2024-11-19T23:54:09Z

For some more context on the cice error, from ice_diag.d:

(ice_comp_nuopc):(ModelAdvance) cice istep, nextsw_cday =         15      0.83111111111111D+02
 (ice_pio_init) create file ./CICE_OUTPUT/iceh_inst.2021-03-24-09600.nc

 Finished writing ./CICE_OUTPUT/iceh_inst.2021-03-24-09600.nc
(ice_comp_nuopc):(ModelAdvance) cice istep, nextsw_cday =         16      0.83118055555556D+02
 (ice_pio_init) create file ./CICE_OUTPUT/iceh_inst.2021-03-24-10200.nc

 Finished writing ./CICE_OUTPUT/iceh_inst.2021-03-24-10200.nc
(ice_comp_nuopc):(ModelAdvance) cice istep, nextsw_cday =         17      0.83125000000000D+02
 (ice_pio_init) create file ./CICE_OUTPUT/iceh_inst.2021-03-24-10800.nc

 Finished writing ./CICE_OUTPUT/iceh_inst.2021-03-24-10800.nc
 (construct_filename) history stream =            4
 (construct_filename) history filename = iceh_inst.2021-03-24-10800.nc
 (construct_filename) filename in use for stream            3
 (construct_filename) filename for stream iceh_inst.2021-03-24-10800.nc
 (construct_filename) Use namelist hist_suffix so history filenames are unique

jswhit2 · 2024-11-21T21:15:10Z

The problem with the ice model (and a potential fix) are documented in PR #3121

DavidBurrows-NCO and others added 7 commits October 25, 2024 07:05

Updates for setup_expt and setup_xml workflow on Gaea C5 and C6

e97d26d

Merge branch 'NOAA-EMC:develop' into gw_c5OSc6

ecb706c

update submodules and some files to run on C5/C6

d7e2398

modulefile updates for C6

3dbc625

merge conflicts

a8d2720

module file updates

296b5c3

update C5 resources

16d1ff4

enable C5 and C6 build_all and load modules

5973d8c

update ufs_utils hash to develop

3c946e3

remove data in path for C5 fix files to be consistent with other systems

fc56219

Merge branch 'NOAA-EMC:develop' into gw_c5OSc6

ad28704

This was referenced Nov 18, 2024

WW3 cannot build pre-and-post processing jobs ufs-community/ufs-weather-model#2502

Open

Issue building pre/post wave jobs with latest ufs-weather-model #3110

Open

merging gdas.cd conflict

7e4e168

jswhit2 mentioned this pull request Nov 21, 2024

Enable DA cycling on gaea #3032

Open

10 tasks

DavidBurrows-NCO added 5 commits November 22, 2024 13:00

Merge branch 'NOAA-EMC:develop' into gw_c5OSc6

55c3755

Merge branch 'NOAA-EMC:develop' into gw_c5OSc6

9da291a

Merge branch 'NOAA-EMC:develop' into gw_c5OSc6

8e9c574

Merge branch 'NOAA-EMC:develop' into gw_c5OSc6

5912489

Merge branch 'NOAA-EMC:develop' into gw_c5OSc6

8ee25a5

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Clone, build, and run C48_ATM, C48_S2SW, and C96_atm3DVar on Gaea C5 and C6 #3106

Clone, build, and run C48_ATM, C48_S2SW, and C96_atm3DVar on Gaea C5 and C6 #3106

DavidBurrows-NCO commented Nov 15, 2024 •

edited by WalterKolczynski-NOAA

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Clone, build, and run C48_ATM, C48_S2SW, and C96_atm3DVar on Gaea C5 and C6 #3106

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Clone, build, and run C48_ATM, C48_S2SW, and C96_atm3DVar on Gaea C5 and C6 #3106

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DavidBurrows-NCO commented Nov 15, 2024 • edited by WalterKolczynski-NOAA Loading

Description

Type of change

Change characteristics

How has this been tested?

Checklist

DavidBurrows-NCO commented Nov 15, 2024

jswhit commented Nov 15, 2024

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DavidBurrows-NCO commented Nov 15, 2024

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