feat(allcontributors): Adds avatars to README

Uses {allcontributors} in a GitHub action to add 3 lists of contributors
to the README. Also, updates the DESCRIPTION file to reflect Kelli
being the project lead, authors have committed code, and contributors
have contributed code at some time but are not active authors. Some of
these decisions were discussed during a seaside chat on August 22, 2024
and some was discussed during an Implementation Team Meeting on
October 23, 2024. We will be using our own GitHub action unless the
action can be moved to GitHub actions for R and created into a reusable
workflow.

.github/workflows/call-allcontributors.yml

@@ -0,0 +1,38 @@
+name: Collect contributors
+
+on:
+  workflow_dispatch:
+  schedule:
+    - cron: '0 8 * * 1'
+
+jobs:
+    run-r-script:
+        runs-on: ubuntu-latest
+        env:
+            GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+        permissions:
+            contents: write
+            pull-requests: write
+        steps:
+            - name: Checkout repository
+              uses: actions/checkout@v3
+            - name: Setup R
+              uses: r-lib/actions/setup-r@v2
+
+            - uses: r-lib/actions/setup-r-dependencies@v2
+              with:
+                packages: |
+                    gh
+                    allcontributors
+            - name: Collect contributor data
+              run: Rscript -e 'allcontributors::add_contributors(files = c("README.md"), alphabetical = FALSE)'
+            - name: Create Pull Request
+              uses: peter-evans/create-pull-request@v5
+              with:
+                commit-message: "Update contributors"
+                branch: update-contributors
+                title: "Update contributors"
+                body: "This PR updates the contributors list."
+                labels: "auto-update"
+                add-paths: |
+                  README.md

DESCRIPTION

@@ -2,44 +2,122 @@ Package: FIMS
 Title: The Fisheries Integrated Modeling System
 Version: 0.2.0.0
 Authors@R: c(
-    person("Christine", "Stawitz", , "[email protected]", role = c("aut", "cre"),
-           comment = c(ORCID = "0000-0003-3122-4501")),
-    person("Nathan", "Vaughan", role = "aut"),
-    person("Howard", "Townsend", role = "aut"),
-    person(c("Ian", "G."), "Taylor", role = "aut",
-           comment = c(ORCID = "0000-0002-4232-5669")),
-    person("Matthew", "Supernaw", role = "aut"),
-    person("Jane", "Sullivan", role = "aut"),
-    person("Kyle", "Shertzer", role = "aut",
-           comment = c(ORCID = "0000-0001-7196-5959")),
-    person("Megumi", "Oshima", role = "aut"),
-    person(c("Cole", "C."), "Monnahan", role = "aut",
-           comment = c(ORCID = "0000-0003-0871-6700")),
-    person(c("Timothy", "J."), "Miller", role = "aut",
-           comment = c(ORCID = "0000-0003-1411-1206")),
-    person("Richard", "Methot", role = "aut"),
-    person("Patrick", "Lynch", role = "aut",
-           comment = c(ORCID = "0000-0001-7121-6181")),
-    person("Bai", "Li", role = "aut",
-           comment = c(ORCID = "0000-0002-8249-1442")),
-    person("Huihua", "Lee", role = "aut"),
-    person(c("Christopher", "M."), "Legault", role = "aut",
-           comment = c(ORCID = "0000-0002-0328-1376")),
-    person(c("Kelli", "F."), "Johnson", role = "aut",
-           comment = c(ORCID = "0000-0002-5149-451X")),
-    person(c("James", "N."), "Ianelli", role = "aut",
-           comment = c(ORCID = "0000-0002-7170-8677")),
-    person("Alan", "Haynie", role = "aut"),
-    person(c("Andrea", "M."), "Havron", role = "aut",
-           comment = c(ORCID = "0000-0002-4080-448X")),
-    person(c("Kathryn", "L."), "Doering", role = "aut",
-           comment = c(ORCID = "0000-0002-0396-7044")),
-    person(c("Edward", "J."), "Dick", role = "aut",
-           comment = c(ORCID = "0000-0001-7681-9176")),
-    person("Jon", "Brodziak", role = "aut"),
-    person("Kristan", "Blackhart", role = "aut"),
-    person("Peter", "Kuriyama", role = "aut",
-           comment = c(ORCID = "0000-0002-6971-4015"))
+    person(
+      role = c("aut", "cre"),
+      family = "Johnson",
+      given = c("Kelli", "F."),
+      email = "[email protected]",
+      comment = c(ORCID = "0000-0002-5149-451X")
+    ),
+    person(
+      role = "aut",
+      family = "Brodziak",
+      given = c("Jon", "K.", "T."),
+      comment = c(ORCID = "0000-0001-8690-5588")
+    ),
+    person(
+      role = "aut",
+      family = "Doering",
+      given = c("Kathryn", "L."),
+      comment = c(ORCID = "0000-0002-0396-7044")
+    ),
+    person(
+      role = "aut",
+      family = "Havron",
+      given = c("Andrea", "M."),
+      comment = c(ORCID = "0000-0002-4080-448X")
+    ),
+    person(
+      role = "aut",
+      family = "Klasky",
+      given = c("Ronald"),
+      comment = c(ORCID = "0009-0004-7563-7716")
+    ),
+    person(
+      role = "aut",
+      family = "Kuriyama",
+      given = c("Peter", "T."),
+      comment = c(ORCID = "0000-0002-6971-4015")
+    ),
+    person(
+      role = "aut",
+      family = "Legault",
+      given = c("Christopher", "M."),
+      comment = c(ORCID = "0000-0002-0328-1376")
+    ),
+    person(
+      role = "aut",
+      family = "Li",
+      given = "Bai",
+      comment = c(ORCID = "0000-0002-8249-1442")
+    ),
+    person(
+      role = "aut",
+      family = "Miller",
+      given = c("Timothy", "J."),
+      comment = c(ORCID = "0000-0003-1411-1206")
+    ),
+    person(
+      role = "aut",
+      family = "Monnahan",
+      given = c("Cole", "C."),
+      comment = c(ORCID = "0000-0003-0871-6700")
+    ),
+    person(
+      role = "aut",
+      family = "Oshima",
+      given = c("Megumi", "C."),
+      comment = c(ORCID = "0009-0002-2239-1594")
+    ),
+    person(
+      role = "aut",
+      family = "Shertzer",
+      given = c("Kyle", "W."),
+      comment = c(ORCID = "0000-0001-7196-5959")
+    ),
+    person(
+      role = "aut",
+      family = "Stawitz",
+      given = c("Christine", "C."),
+      email = "[email protected]",
+      comment = c(ORCID = "0000-0003-3122-4501")
+    ),
+    person(
+      role = "aut",
+      family = "Sullivan",
+      given = c("Jane", "Y."),
+      comment = c(ORCID = "0000-0002-8094-1673")
+    ),
+    person(
+      role = "aut",
+      family = "Supernaw",
+      given = "Matthew",
+      comment = c(ORCID = "0009-0007-3681-7433")
+    ),
+    person(
+      role = "aut",
+      family = "Taylor",
+      given = c("Ian", "G."),
+      comment = c(ORCID = "0000-0002-4232-5669")
+    ),
+    person(
+      role = "aut",
+      family = "Vaughan",
+      given = c("Nathan", "R."),
+      comment = c(ORCID = "0009-0000-3054-6950")
+    ),
+    person(
+      role = "ctb",
+      family = "Blackhart",
+      given = "Kristan",
+      comment = c(ORCID = "0000-0003-4232-2510")
+    ),
+    person(
+      role = "ctb",
+      family = "Ianelli",
+      given = c("James", "N."),
+      comment = c(ORCID = "0000-0002-7170-8677")
+    )
   )
 Description: The Fisheries Integrated Modeling System is a next-generation
     framework of stock assessment models, assisting fishery managers with
@@ -70,7 +148,7 @@ Imports:
     tibble,
     TMB (>= 1.8.0),
     utils
-Suggests: 
+Suggests:
     covr,
     knitr,
     mockery,
@@ -82,11 +160,11 @@ Suggests:
     tidyr,
     usethis,
     withr
-LinkingTo: 
+LinkingTo:
     Rcpp,
     RcppEigen,
     TMB
-VignetteBuilder: 
+VignetteBuilder:
     knitr
 Config/testthat/edition: 3
 Config/testthat/parallel: true

README.md

@@ -30,6 +30,8 @@ All contributors participating and contributing to the FIMS project are expected
 
 ****************************
 
+## Contributors
+
 ## NOAA Disclaimer
 
 This repository is a scientific product and is not official communication of the National Oceanic and Atmospheric Administration, or the United States Department of Commerce. All NOAA GitHub project code is provided on an 'as is' basis and the user assumes responsibility for its use. Any claims against the Department of Commerce or Department of Commerce bureaus stemming from the use of this GitHub project will be governed by all applicable Federal law. Any reference to specific commercial products, processes, or services by service mark, trademark, manufacturer, or otherwise, does not constitute or imply their endorsement, recommendation or favoring by the Department of Commerce. The Department of Commerce seal and logo, or the seal and logo of a DOC bureau, shall not be used in any manner to imply endorsement of any commercial product or activity by DOC or the United States Government.