Update NWA12 example, xml, and refactor NWA12-ci [WIP]

.github/workflows/NWA12-ci.yaml → .github/workflows/CEFI_MOM6-ci.yaml

@@ -1,7 +1,7 @@
-name: NWA12-ci
+name: CEFI-MOM6-ci
 
 on:
-  # Triggers this workflow on pull request event with "NWA12_RT_gaea_c5" label
+  # Triggers this workflow on pull request event with "CEFI_MOM6_RT_gaea_c5" label
   pull_request:
     branches: [ "main" ]
     types: [ labeled ]
@@ -14,7 +14,7 @@ env:
 #
 jobs:
   checkout-build:
-    if: ${{ github.event.label.name == 'NWA12_RT_gaea_c5' }}
+    if: ${{ github.event.label.name == 'CEFI_MOM6_RT_gaea_c5' }}
     runs-on: self-hosted
     timeout-minutes: 600
     strategy:
@@ -24,12 +24,12 @@ jobs:
     - name: Checkout CEFI-regional-MOM6
       uses: actions/checkout@v4
       with:
-        path: ${{ github.run_id }}/NWA12_CHECK
+        path: ${{ github.run_id }}/CEFI_MOM6_CHECK
         submodules: recursive
 
     - name: Build MOM6SIS2
       run: |
-        cd ${{ env.TEST_DIR }}/NWA12_CHECK/builds
+        cd ${{ env.TEST_DIR }}/CEFI_MOM6_CHECK/builds
         jobid=$(sbatch --parsable ci_build_driver.sh | awk -F';' '{print $1}' | cut -f1)
         #
         sleep 1
@@ -45,25 +45,25 @@ jobs:
             sleep 60  # Adjust the sleep duration as needed
         done
         #
-        check_file="${{ env.TEST_DIR }}/NWA12_CHECK/builds/build/gaea-ncrc5.intel23/ocean_ice/repro/MOM6SIS2"
+        check_file="${{ env.TEST_DIR }}/CEFI_MOM6_CHECK/builds/build/gaea-ncrc5.intel23/ocean_ice/repro/MOM6SIS2"
         if [ -f "$check_file" ]; then
             echo "PASSED: $check_file"
         else
             echo "FAILED: $check_file"
             exit 1
         fi 
 
-  run-NWA12-ci:
+  run-CEFI_MOM6-ci:
     needs: checkout-build
     runs-on: self-hosted
     strategy:
       max-parallel: 2
       matrix:
-        case: ["NWA12.CFC"] #, "NWA12.COBALT"]
+        case: ["NWA12.COBALT"] #, "NWA12.CFC"]
     steps:
       - name: Run Experiment ${{ matrix.case }}
         run: |
-          cd ${{ env.TEST_DIR }}/NWA12_CHECK/exps/${{ matrix.case }}
+          cd ${{ env.TEST_DIR }}/CEFI_MOM6_CHECK/exps/${{ matrix.case }}
           jobid=$(sbatch --parsable driver.sh | awk -F';' '{print $1}' | cut -f1) 
           #
           sleep 1
@@ -80,7 +80,7 @@ jobs:
           done
           # 
           expected_string="All restart files are identical, PASS"
-          check_file="${{ env.TEST_DIR }}/NWA12_CHECK/exps/${{ matrix.case }}/${{ matrix.case }}_o.$jobid"
+          check_file="${{ env.TEST_DIR }}/CEFI_MOM6_CHECK/exps/${{ matrix.case }}/${{ matrix.case }}_o.$jobid"
           if [ -f "$check_file" ]; then
              if grep -qF "$expected_string" $check_file; then
                  echo "PASSED: ${{ matrix.case }}"
@@ -93,29 +93,29 @@ jobs:
              exit 10
           fi
 
-      - name: Add "pass_NWA12_RT" label on success
-        if: success() && contains(github.event.label.name, 'NWA12_RT_gaea_c5')
+      - name: Add "pass_CEFI_MOM6_RT" label on success
+        if: success() && contains(github.event.label.name, 'CEFI_MOM6_RT_gaea_c5')
         run: |
           TOKEN=${{ secrets.GITHUB_TOKEN }}
-          RT_TEST_LABEL="NWA12_RT_gaea_c5"
-          PASS_LABEL="pass_NWA12_RT"
+          RT_TEST_LABEL="CEFI_MOM6_RT_gaea_c5"
+          PASS_LABEL="pass_CEFI_MOM6_RT"
 
-          # Remove the "NWA12_RT_gaea_c5" label
+          # Remove the "CEFI_MOM6_RT_gaea_c5" label
           curl -X DELETE \
             -H "Authorization: Bearer $TOKEN" \
             -H "Accept: application/vnd.github.v3+json" \
             "https://api.github.com/repos/$GITHUB_REPOSITORY/issues/${{ env.PR_NUMBER }}/labels/$RT_TEST_LABEL"
 
 
-          # Add the "pass_NWA12_RT" label
+          # Add the "pass_CEFI_MOM6_RT" label
           curl -X POST \
             -H "Authorization: Bearer $TOKEN" \
             -H "Accept: application/vnd.github.v3+json" \
             "https://api.github.com/repos/$GITHUB_REPOSITORY/issues/${{ env.PR_NUMBER }}/labels" \
             -d "{\"labels\":[\"$PASS_LABEL\"]}"
 
   clean-up:
-    needs: run-NWA12-ci
+    needs: run-CEFI_MOM6-ci
     runs-on: self-hosted
     strategy:
       max-parallel: 1

exps/NWA12.COBALT/INPUT/MOM_input

@@ -412,7 +412,7 @@ TIDE_MF = True                  !   [Boolean] default = False
 TIDE_MM = True                  !   [Boolean] default = False
                                 ! If true, apply tidal momentum forcing at the MM frequency. This is only used
                                 ! if TIDES is true.
-TIDE_SAL_SCALAR_VALUE = 0.010   !   [m m-1]
+TIDE_SAL_SCALAR_VALUE = 0.01    !   [m m-1]
                                 ! The constant of proportionality between sea surface height (really it should
                                 ! be bottom pressure) anomalies and bottom geopotential anomalies. This is only
                                 ! used if TIDES and TIDE_USE_SAL_SCALAR are true.
@@ -430,12 +430,17 @@ MASS_WEIGHT_IN_PRESSURE_GRADIENT = True !   [Boolean] default = False
                                 ! bathymetry in FV pressure gradient calculations.
 
 ! === module MOM_hor_visc ===
-LAPLACIAN = False
+LAPLACIAN = True
+KH = 0
+SMAGORINSKY_KH = True
+SMAG_LAP_CONST = 0.05
+KH_VEL_SCALE = 0.0
+RESOLN_SCALED_KH = False
+
 BIHARMONIC = True
 AH = 0.0
 AH_VEL_SCALE = 0.010             !   [m s-1] default = 0.0
-SMAGORINSKY_AH = True
-SMAG_BI_CONST = 0.015
+SMAGORINSKY_AH = False
 
 
 ! === module MOM_vert_friction ===
@@ -675,5 +680,6 @@ SEA_ICE_RIGID_MASS = 100.0      !   [kg m-2] default = 1000.0
 ! Misc
 DO_GEOTHERMAL = False
 EPBL_MLD_BISECTION = True
+EPBL_MLD_MAX_ITS = 40
 BBL_USE_EOS = True
 AGGREGATE_FW_FORCING = True

exps/NWA12.COBALT/INPUT/MOM_layout_20

@@ -0,0 +1,3 @@
+#override IO_LAYOUT = 1,1
+#override LAYOUT    = 20,20
+#override MASKTABLE = MOM_mask_table

exps/NWA12.COBALT/INPUT/MOM_layout_25

@@ -0,0 +1,3 @@
+#override IO_LAYOUT = 1,1
+#override LAYOUT    = 25,25
+#override MASKTABLE = MOM_mask_table

exps/NWA12.COBALT/INPUT/MOM_override

@@ -1,8 +1,14 @@
 #override USE_generic_tracer = True
 #override MAX_FIELDS=500
 #override OBC_TIDE_NODAL_REF_DATE = 1993,7,2
-!#override DT_OBC_SEG_UPDATE_OBGC = 3600
+!#override DT_OBC_SEG_UPDATE_OBGC = 1200
 #override CHL_FROM_FILE = False
 #override DO_GEOTHERMAL = True
 #override GENERIC_TRACER_IC_FILE = "NWA12_COBALT_2023_10_spinup_2003.nc"
 #override EPBL_ANSWER_DATE = 20231231
+#override DT_THERM = 1200.0
+#override DT = 400.0
+#override MLD_ITERATION_GUESS = False
+#override REMAP_AUXILIARY_VARS = True
+#override DIABATIC_FIRST = False
+#override EQN_OF_STATE = "WRIGHT_FULL"