fix bug when calling unallocated diagnostics #32
Workflow file for this run
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| name: Compile SHiELD and run tests | |
| # This GitHub Action Workflow is running on the cloud shieldphysicsciintel cluster | |
| # The tests are run inside of a container with the following software/libraries: | |
| # -intel: 2023.2.0 | |
| # -hdf5: 1.14.0 | |
| # -netcdf-c: 4.9.2 | |
| # -netcdf-fortran: 4.6.0 | |
| # -cmake | |
| # -libyaml | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| #this should cancel in progress ci runs for the same PR | |
| #(e.g. a second commit on the same PR comes in while CI is still running) | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| checkout: | |
| if: github.repository == 'NOAA-GFDL/SHiELD_physics' | |
| runs-on: [shieldphysicsciintel] | |
| name: Checkout Code | |
| steps: | |
| # It can take a long time (5-15 minutes) to spinup nodes | |
| # so this salloc will prompt 46 nodes to startup and stay active for 20 min | |
| # this is enough nodes for the first 17 tests to run in parallel, and we | |
| # have 17 runners configured. | |
| # - run: salloc --partition=p2 -N 46 -J $GITHUB_SHA sleep 20m & | |
| - run: /contrib/fv3/SHiELD_physics_CI/checkout.sh -b $GITHUB_REF -h $GITHUB_SHA | |
| build: | |
| if: github.repository == 'NOAA-GFDL/SHiELD_physics' | |
| runs-on: [shieldphysicsciintel] | |
| name: SHiELD build | |
| needs: [checkout] | |
| strategy: | |
| fail-fast: true | |
| max-parallel: 17 | |
| matrix: | |
| runscript: [/contrib/fv3/SHiELD_physics_CI/compile.sh] | |
| config: [shield] | |
| hydro: [nh] | |
| bit: [32bit] | |
| mode: [repro] | |
| steps: | |
| - env: | |
| RUNSCRIPT: ${{ matrix.runscript }} | |
| CONFIG: ${{ matrix.config }} | |
| HYDRO: ${{ matrix.hydro }} | |
| BIT: ${{ matrix.bit }} | |
| MODE: ${{ matrix.mode }} | |
| run: $RUNSCRIPT -b $GITHUB_REF -h $GITHUB_SHA -c $CONFIG --hydro $HYDRO --bit $BIT -m $MODE | |
| # test: | |
| # if: github.repository == 'NOAA-GFDL/SHiELD_physics' | |
| # runs-on: [shieldphysicsciintel] | |
| # name: SHiELD test suite | |
| # needs: [checkout, build] | |
| # strategy: | |
| # fail-fast: false | |
| # max-parallel: 17 | |
| # matrix: | |
| # runscript: [/contrib/fv3/SHiELD_physics_CI/run_test.sh] | |
| # argument: | |
| # - test1 | |
| # - test2 | |
| # steps: | |
| # # This will end the slurm job started in the checkout job | |
| # - run: scancel -n $GITHUB_SHA | |
| # - env: | |
| # RUNSCRIPT: ${{ matrix.runscript }} | |
| # ARG1: ${{ matrix.argument }} | |
| # run: $RUNSCRIPT -t $ARG1 -b $GITHUB_REF -h $GITHUB_SHA | |
| # shutdown: | |
| # if: always() && github.repository == 'NOAA-GFDL/SHiELD_physics' | |
| # runs-on: [shieldphysicsciintel] | |
| # name: Shutdown Processes | |
| # needs: [checkout, build, test] | |
| # needs: [checkout, build] | |
| # strategy: | |
| # fail-fast: false | |
| # max-parallel: 17 | |
| # matrix: | |
| # test: | |
| # - test2 | |
| # - test2 | |
| # steps: | |
| # - run: scancel -n $GITHUB_SHA | |
| # - env: | |
| # JOB: ${{ github.sha }}_${{ matrix.test }} | |
| # run: scancel -n $JOB |