Github code migration (#1)

* migrating files into repo

* adding gitignore

* changed identifier to lid to be less ambigious

* Delete Source/RnR/tests/test_data/2930769 directory

* editing binaries

* Delete Source/RnR/tests/test_data/2930769 directory

* adding back non-malformed data

.gitattributes

@@ -19,3 +19,4 @@
 *.tgz binary
 *.tar.gz binary
 *.gz binary
+*.gpkg binary

.github/workflows/pytest_rnr.yml

@@ -0,0 +1,57 @@
+name: PyTest Suite
+
+on: [pull_request]
+
+jobs:
+  # lint_and_format:
+  #   runs-on: ubuntu-latest
+
+  #   steps:
+  #   - uses: actions/checkout@v4
+  #   - uses: actions/setup-python@v5
+  #     with:
+  #       python-version: "3.11"
+
+  #   - name: Install pre-commit
+  #     run: |
+  #         python -m pip install pre-commit
+
+  #   - name: Run pre-commit hooks on all files
+  #     run: |
+  #         pre-commit run --all-files
+
+  build:
+    runs-on: ubuntu-latest
+
+    strategy:
+      matrix:
+        python-version: ["3.9", "3.10", "3.11"]
+
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v3
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    - name: Set UV_HTTP_TIMEOUT
+      run: echo "UV_HTTP_TIMEOUT=600" >> $GITHUB_ENV
+
+    - name: Install python dependencies and packages
+      run: |
+        python -m pip install --upgrade pip
+        pip install uv
+        uv venv
+        source .venv/bin/activate
+        uv pip install -r Source/RnR/requirements.txt
+
+    - name: Echo package versions
+      run: |
+        source .venv/bin/activate
+        uv pip freeze
+
+    - name: Run unit tests
+      run: |
+        source .venv/bin/activate
+        cd Source/RnR
+        pytest -s

.gitignore

@@ -50,4 +50,22 @@ terraform.rc
 **/buildplan
 **/destroyplan
 
-Dev/env.yaml
+Dev/env.yaml
+
+###################
+# Replace and Route
+###################
+Source/RnR/.venv
+Source/RnR/src/rnr/app/core/config.ini
+Source/RnR/mock_db/rnr_schema_dump_20240612.dump
+Source/RnR/data
+
+*.ruff_cache
+*.pytest_cache
+
+*.pyc
+*.egg-info/
+__pycache__/
+*.py[cod]
+.env
+.python-version

Source/RnR/CHANGELOG.md

@@ -0,0 +1,72 @@
+All notable changes to this project will be documented in this file.
+We follow the [Semantic Versioning 2.0.0](http://semver.org/) format.
+
+
+## 0.0.3 2024-08-20
+
+### Added
+
+- migrated to github
+- added references to t-route and hfsubset
+
+
+
+## 0.0.2 2024-08-12
+
+### Added
+
+- `/static` libraries for JS and CSS
+- `/data` directiories now are linked to the 
+
+### Deprecated
+
+- Nothing.
+
+### Removed
+
+- Reformatted the working dir to format application under one dir
+
+### Fixed
+
+- Nothing.
+
+
+## 0.0.2 2024-08-2
+
+### Added
+
+- the `consumer/` folder to handle all data services related to the consumer (similar to the tools/ dir from PI-2)
+
+### Deprecated
+
+- Nothing.
+
+### Removed
+
+- Reformatted the working dir to format application under one dir
+
+### Fixed
+
+- Nothing.
+
+
+## 0.0.1 2024-07-17
+
+### Added
+
+- Added microservices to read a DB of RFC information
+- Commented/documented microservices that read the NWPS API
+- Commented/documented microservices that read the DB
+- Added relevant tests and project dependencies
+
+### Deprecated
+
+- Nothing.
+
+### Removed
+
+- Nothing.
+
+### Fixed
+
+- Nothing.

Source/RnR/Dockerfile.app

@@ -0,0 +1,15 @@
+FROM python:3.11-slim
+
+WORKDIR /app
+
+COPY src/ /app/src
+
+COPY requirements.txt ./
+COPY pyproject.toml ./
+COPY README.md ./
+
+RUN pip install uv==0.2.5
+RUN uv venv
+RUN uv pip install --no-cache-dir -r requirements.txt
+
+ENV PYTHONPATH=/app:$PYTHONPATH

Source/RnR/Dockerfile.docs

@@ -0,0 +1,14 @@
+FROM python:3.11-slim
+
+WORKDIR /app
+
+COPY src/ /app/src
+COPY requirements.txt ./
+COPY pyproject.toml ./
+COPY README.md ./
+COPY docs/ ./docs
+COPY mkdocs.yml ./
+
+RUN pip install uv==0.2.5
+RUN uv venv
+RUN uv pip install --no-cache-dir -r requirements.txt

Source/RnR/INSTALL.md

@@ -0,0 +1,3 @@
+# Installation instructions
+
+Detailed instructions on how to install, configure, and get the project running.

Source/RnR/LICENSE

@@ -0,0 +1,7 @@
+“Software code created by U.S. Government employees is not subject to copyright
+in the United States (17 U.S.C. §105). The United States/Department of Commerce
+reserve all rights to seek and obtain copyright protection in countries other
+than the United States for Software authored in its entirety by the Department
+of Commerce. To this end, the Department of Commerce hereby grants to Recipient
+a royalty-free, nonexclusive license to use, copy, and create derivative works
+of the Software outside of the United States.”

Source/RnR/README.md

@@ -0,0 +1,98 @@
+# Replace and Route
+
+A near real-time system that leverages the NWM data assimilation and channel routing capabilities to extend official flood forecasts issued by RFCs to all river reaches downstream of RFC forecast points by routing the forecasts through the river network to the next downstream forecast point. 
+
+
+
+
+## Installation
+
+1. 
+
+> Keep the README fresh! It's the first thing people see and will make the initial impression.
+
+## Credits and References
+
+Credit to the developers and maintainers of https://github.com/NOAA-OWP/owp-open-source-project-template/tree/master for providing a starting template
+
+# Project Title
+
+**Description**:  Put a meaningful, short, plain-language description of what
+this project is trying to accomplish and why it matters.
+Describe the problem(s) this project solves.
+Describe how this software can improve the lives of its audience.
+
+Other things to include:
+
+  - **Technology stack**: Indicate the technological nature of the software, including primary programming language(s) and whether the software is intended as standalone or as a module in a framework or other ecosystem.
+  - **Status**:  Alpha, Beta, 1.1, etc. It's OK to write a sentence, too. The goal is to let interested people know where this project is at. This is also a good place to link to the [CHANGELOG](CHANGELOG.md).
+  - **Links to production or demo instances**
+  - Describe what sets this apart from related-projects. Linking to another doc or page is OK if this can't be expressed in a sentence or two.
+
+
+**Screenshot**: If the software has visual components, place a screenshot after the description; e.g.,
+
+![](https://raw.githubusercontent.com/NOAA-OWP/owp-open-source-project-template/master/doc/Screenshot.png)
+
+
+## Dependencies
+
+1. RabbitMQ (Version 3.13) https://www.rabbitmq.com/docs/download
+2. Rye (Version 0.36)
+3. A Postgres DB of RFC locations
+4. MKDocs (https://squidfunk.github.io/mkdocs-material/publishing-your-site/#with-github-actions-material-for-mkdocs)
+
+## Installation
+
+Detailed instructions on how to install, configure, and get the project running.
+This should be frequently tested to ensure reliability. Alternatively, link to
+a separate [INSTALL](INSTALL.md) document.
+
+## Configuration
+
+If the software is configurable, describe it in detail, either here or in other documentation to which you link.
+
+## Usage
+
+Show users how to use the software.
+Be specific.
+Use appropriate formatting when showing code snippets.
+
+## How to test the software
+
+Run the following command from the project's home dir
+```sh
+rye test
+```
+
+## Known issues
+
+Still a POC. Will be finished 9/1/24
+
+## Getting help
+
+If you have questions, concerns, bug reports, etc, please file an issue in this repository's Issue Tracker.
+
+## Getting involved
+
+This section should detail why people should get involved and describe key areas you are
+currently focusing on; e.g., trying to get feedback on features, fixing certain bugs, building
+important pieces, etc.
+
+General instructions on _how_ to contribute should be stated with a link to [CONTRIBUTING](CONTRIBUTING.md).
+
+
+----
+
+## Open source licensing info
+1. [TERMS](TERMS.md)
+2. [LICENSE](LICENSE)
+
+
+----
+
+## Credits and references
+
+1. Projects that inspired you
+2. Related projects
+3. Books, papers, talks, or other sources that have meaningful impact or influence on this project