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add methods to export results in tabular format #280

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add methods to export results in tabular format #280

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Commits on Oct 15, 2024

  1. add print links method to LinkGraph, improve LinkGraph string represe… 

    …ntation
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    liannette committed Oct 15, 2024
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Commits on Oct 16, 2024

  1. feat: add a method to print tabular results files

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    liannette committed Oct 16, 2024
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  2. improve method names and docstrings, remove unused method to export g… 

    …cf file
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    liannette committed Oct 16, 2024
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  3. improve doctring and typing

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    liannette committed Oct 16, 2024
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  4. fix a failing test

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    liannette committed Oct 16, 2024
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  5. refactor a little bit the spectrum method to covert to dict

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    liannette committed Oct 16, 2024
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  6. change the output format for gnps_annotations in metabolomics results… 

    … file, improve docstrings
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    liannette committed Oct 16, 2024
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Commits on Oct 17, 2024

  1. fix: convert int to str before using join

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    liannette committed Oct 17, 2024
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  2. change representation of empty values in output files for improved in… 

    …tegration to excel
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    liannette committed Oct 17, 2024
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  3. refactoring the export methods

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    liannette committed Oct 17, 2024
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Commits on Oct 18, 2024

  1. small refactor: specify staticmethod

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    liannette committed Oct 18, 2024
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  2. add more tests

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    liannette committed Oct 18, 2024
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  3. correct typing in doctrings

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    liannette committed Oct 18, 2024
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Commits on Oct 22, 2024

  1. typing: changed typings to pass mypy static typing checks

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    liannette committed Oct 22, 2024
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  2. refactor: change the order of methods/functions

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    liannette committed Oct 22, 2024
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Commits on Nov 4, 2024

  1. restore the order of already existing functions and methods

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    liannette committed Nov 4, 2024
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  2. make dicts json compatible

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    liannette committed Nov 4, 2024
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  3. rename functions and variables

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    liannette committed Nov 4, 2024
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  4. refactor: changed the place when the index is added to the link dict

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    liannette committed Nov 4, 2024
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  5. use csv package to write the tabular output files

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    liannette committed Nov 4, 2024
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  6. make sure all elements of the input list have the same type of data.

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    liannette committed Nov 4, 2024
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  7. shorten to long doc string lines, correct some doc strings

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    liannette committed Nov 4, 2024
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  8. tests: adapted the test to the changes

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    liannette committed Nov 4, 2024
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  9. remove a file that was committed by accident

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    liannette committed Nov 4, 2024
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Commits on Nov 5, 2024

  1. Merge branch 'NPLinker:dev' into output_files

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    liannette authored Nov 5, 2024
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Commits on Nov 19, 2024

  1. Improve docstrings 

    Apply suggestions from code review

Co-authored-by: Cunliang Geng <[email protected]>
    @liannette @CunliangGeng
    liannette and CunliangGeng authored Nov 19, 2024
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  2. Improve docstrings 

    Apply suggestions from code review

Co-authored-by: Cunliang Geng <[email protected]>
    @liannette @CunliangGeng
    liannette and CunliangGeng authored Nov 19, 2024
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  3. refactor: add method to convert a value to string for tabular output

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    liannette committed Nov 19, 2024
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  4. Merge branch 'output_files' of https://github.com/liannette/nplinker … 

    …into output_files
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    liannette committed Nov 19, 2024
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Commits on Nov 20, 2024

  1. improve doctring, add a comment about key order of bgc dict represent… 

    …ation
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    liannette committed Nov 20, 2024
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  2. move to_string method to the BGC/Spectrum class, add a to_tabular method

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    liannette committed Nov 20, 2024
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  3. add tests for the to_string method

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    liannette committed Nov 20, 2024
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  4. change to_tabular to it returns a list and not a string

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    liannette committed Nov 20, 2024
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Commits on Nov 25, 2024

  1. refactor: to_tabular returns dict, to_string turned into private func… 

    …, tabs are replaced in to_tabular
    @liannette
    liannette committed Nov 25, 2024
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