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Updating dockerfile for 21.08
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cjnolet committed Aug 24, 2021
1 parent b67e8b8 commit 7ebe54a
Showing 1 changed file with 6 additions and 6 deletions.
12 changes: 6 additions & 6 deletions Dockerfile
Original file line number Diff line number Diff line change
@@ -1,14 +1,16 @@
ARG BASE_IMAGE=rapidsai/rapidsai:21.06-cuda11.0-runtime-ubuntu18.04-py3.7
ARG BASE_IMAGE=rapidsai/rapidsai:21.08-cuda11.2-runtime-ubuntu18.04-py3.7

FROM ${BASE_IMAGE}
RUN apt update && DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
git python3-setuptools python3-pip build-essential libcurl4-gnutls-dev \
zlib1g-dev rsync vim cmake tabix

RUN /opt/conda/envs/rapids/bin/pip install \
scanpy==1.7.2 wget pytabix dash-daq atacworks==0.3.4 \
dash-html-components dash-bootstrap-components dash-core-components
RUN /opt/conda/bin/conda install -y \
scanpy==1.8.1 dash-html-components dash-bootstrap-components dash-core-components dash-daq

RUN /opt/conda/envs/rapids/bin/pip install \
wget pytabix atacworks==0.3.4

RUN /opt/conda/envs/rapids/bin/pip install --ignore-installed numba==0.52.0

WORKDIR /workspace
Expand All @@ -30,5 +32,3 @@ CMD jupyter-lab \
--NotebookApp.token="" \
--NotebookApp.password_required=False

# ENV LD_LIBRARY_PATH /usr/local/cuda-10.2/compat
# RUN echo "export PATH=$PATH:/workspace/data" >> ~/.bashrc

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