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@NationalGenomicsInfrastructure

National Genomics Infrastructure

The Swedish National Genomics Infrastructure (NGI), a technology platform at SciLifeLab, serving primarily Swedish academia.

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  1. miarka-provision miarka-provision Public

    Ansible playbooks for provisioning NGI cluster Miarka

    Jinja 2 13

  2. genomics-status genomics-status Public

    Tornado server for tracking samples at NGI Stockholm

    JavaScript 12 19

  3. ngi_reports ngi_reports Public

    Code to generate reports for use by the NGI in SciLifeLab

    HTML 5 13

  4. MultiQC_NGI MultiQC_NGI Public

    MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.

    Python 3 9

  5. taca-ngi-pipeline taca-ngi-pipeline Public

    Forked from b97pla/taca-ngi-pipeline

    A TACA plugin adding functionality relevant for the ngi_pipeline

    Python 3 13

  6. TACA TACA Public

    Forked from guillermo-carrasco/TACA

    Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm

    Python 14 17

Repositories

Showing 10 of 47 repositories
  • radQC Public

    Pipeline for QC of RAD-seq data

    NationalGenomicsInfrastructure/radQC’s past year of commit activity
    Nextflow 2 MIT 1 1 0 Updated Apr 24, 2025
  • miarka-provision Public

    Ansible playbooks for provisioning NGI cluster Miarka

    NationalGenomicsInfrastructure/miarka-provision’s past year of commit activity
    Jinja 2 13 3 1 Updated Apr 24, 2025
  • genomics-status Public

    Tornado server for tracking samples at NGI Stockholm

    NationalGenomicsInfrastructure/genomics-status’s past year of commit activity
    JavaScript 12 MIT 19 0 3 Updated Apr 24, 2025
  • LIMS2DB Public Forked from Galithil/LIMS2DB
    NationalGenomicsInfrastructure/LIMS2DB’s past year of commit activity
    Python 1 MIT 13 0 0 Updated Apr 23, 2025
  • TACA Public Forked from guillermo-carrasco/TACA

    Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm

    NationalGenomicsInfrastructure/TACA’s past year of commit activity
    Python 14 MIT 20 13 (1 issue needs help) 0 Updated Apr 23, 2025
  • ngi-firn Public

    A laboratory freezer inventory management system created with Nuxt3, Vue and UnaUI.

    NationalGenomicsInfrastructure/ngi-firn’s past year of commit activity
    Vue 0 MIT 0 0 0 Updated Apr 16, 2025
  • checklists_generator Public

    Python script to dynamically generate the bioinfo production checklists for QC, Delivery and Close of NGI sequencing projects

    NationalGenomicsInfrastructure/checklists_generator’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Apr 16, 2025
  • scilifelab_epps Public Forked from Galithil/scilifelab_epps

    A collection of Genologics Clarity LIMS EPPs used at Scilifelab.

    NationalGenomicsInfrastructure/scilifelab_epps’s past year of commit activity
    Python 5 15 0 2 Updated Apr 14, 2025
  • ngi_reports Public

    Code to generate reports for use by the NGI in SciLifeLab

    NationalGenomicsInfrastructure/ngi_reports’s past year of commit activity
    HTML 5 MIT 13 0 1 Updated Apr 10, 2025
  • Yggdrasil Public

    Yggrasil is middleware platform designed to aggregate sample-related metadata, manage the execution of various pipelines for processing sequencing data, and ultimately handle the delivery of analyzed data.

    NationalGenomicsInfrastructure/Yggdrasil’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Mar 25, 2025
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