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51 Open 1,855 Closed
51 Open 1,855 Closed
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Issues list

IonQuant crash
#2042 opened Feb 21, 2025 by Patrick-L-White
@fcyu
1
Confusion over TMT labelling/sample matching
#2041 opened Feb 21, 2025 by emilysouthworth
@fcyu
1
The results from fragpipe closed search are not inconsistent with other search engines
#2040 opened Feb 21, 2025 by punching-samuel
@fcyu
2
Separation of peptide intensities by charge state in IonQuant?
#2039 opened Feb 20, 2025 by dtabang
@fcyu
1
How to set the diagnostic peaks of composition？
#2032 opened Feb 20, 2025 by Reedy91
@dpolasky
1
Difference in information between combined output files
#2029 opened Feb 18, 2025 by arcolaco
@fcyu
3
Question regarding fasta format
#2027 opened Feb 17, 2025 by apsteinberg
@fcyu
5
Exclude peptide terminus from variable modification feature request
#1989 opened Jan 20, 2025 by marhartl
@fcyu
2
TMT 35plex
#1981 opened Jan 16, 2025 by cutleraging
1
MSFragger - ValueError: too many values to unpack speclib
#1960 opened Dec 30, 2024 by Evan-Raymond
@guoci
5
TMT-Integrator doesn't allow for negative mass PTM's
#1954 opened Dec 19, 2024 by ethangilmore
@fcyu
4
Bioconda package for fragpipe last version?
#1896 opened Nov 23, 2024 by rolivella
2
Isobaric label annotation
#1895 opened Nov 22, 2024 by cutleraging
@fcyu
2
DIA_SpecLib_Quant_Phospho_diaPASEF Sitereport
#1860 opened Nov 3, 2024 by dh2305
@fcyu
17
DIA_spec_diaPASEF DIANN output pg file did not contain protein name
#1831 opened Oct 16, 2024 by singhsk2622
@fcyu
2
Process 'DIA-NN: Propagate information' finished, exit code: 1
#1815 opened Oct 4, 2024 by Shinya-Watanabe
@fcyu
12
Protein coverage calculation
#1810 opened Oct 2, 2024 by apsteinberg
@fcyu @anesvi
5
Combined unique peptides column is missing in combined_proteins.tsv
#1808 opened Oct 2, 2024 by SamueldelaCamaraFuentes
@fcyu
DIA db split option split database
#1793 opened Sep 24, 2024 by liorlobel
@guoci
1
PTM Prophet error crashes run
#1781 opened Sep 13, 2024 by Shinya-Watanabe
@fcyu
14
How to set a modification not C-term?
#1763 opened Aug 31, 2024 by a995752924
@fcyu
3
Can we get support for crosslinking MS?
#1738 opened Aug 20, 2024 by bluemooninvestor
BrokenProcessPool split database
#1715 opened Aug 7, 2024 by sarag723
@guoci @fcyu
6
Questions about searching the Pierce iRT peptides.
#1673 opened Jul 15, 2024 by vindr20
@fcyu @yangkl96
18
LFQ-phospho - sequence
#1649 opened Jun 26, 2024 by ghost
@fcyu
2
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