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Chord diagram and other connectivity plot related refactoring #723

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Run time

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Job	Run time
build (3.7)	29m 57s
build (3.8)	21m 29s
build (3.9)	18m 21s
build (3.10)	18m 42s
build (3.11)	16m 25s
	1h 44m 54s