wip

pyneuroml/nsgr/__init__.py

@@ -0,0 +1,11 @@
+#!/usr/bin/env python3
+"""
+Module for working with NSG. See https://github.com/OpenSourceBrain/pynsgr
+
+File: pyneuroml/nsgr/__init__.py
+
+Copyright 2023 NeuroML contributors
+"""
+
+
+

pyneuroml/utils/__init__.py

@@ -6,13 +6,17 @@
 Copyright 2023 NeuroML Contributors
 """
 
+import os
 import typing
+import time
+from pathlib import Path
 import logging
 import re
 import neuroml
 
 
 logger = logging.getLogger(__name__)
+logger.setLevel(logging.DEBUG)
 
 
 def extract_position_info(
@@ -133,3 +137,45 @@ def convert_case(name):
     """Converts from camelCase to under_score"""
     s1 = re.sub("(.)([A-Z][a-z]+)", r"\1_\2", name)
     return re.sub("([a-z0-9])([A-Z])", r"\1_\2", s1).lower()
+
+
+def get_files_generated_after(timestamp: float = time.time(),
+                              directory: str = ".",
+                              ignore_suffixes: list[str] = ["xml", "nml"],
+                              include_suffixes: list[str] = []) -> typing.List[str]:
+    """Get files modified after provided time stamp in directory, excluding provided suffixes.
+
+    Ignores directories.
+
+    :param timestamp: time stamp to compare to
+    :type timestamp: float
+    :param directory: directory to list files of
+    :type directory: str
+    :param ignore_suffixes: file suffixes to ignore
+    :type ignore_suffixes: str
+    :returns: list of file names
+    :rtype: list(str)
+
+    """
+    logger.debug(f"Timestamp is: {timestamp}")
+    current_files = list(Path(directory).glob("*"))
+    # only files, ignore directories
+    current_files = [f for f in current_files if f.is_file()]
+    files = []
+    for file in current_files:
+        excluded = False
+        for sfx in ignore_suffixes:
+            if file.name.endswith(sfx):
+                excluded = True
+
+        # TODO: continue here
+        included = False
+        for sfx in include_suffixes:
+
+
+        if include is True:
+            file_mtime = os.path.getmtime(file)
+            if file_mtime > timestamp:
+                files.append(file.name)
+
+    return files

tests/utils/test_utils.py

@@ -10,9 +10,10 @@
 
 import logging
 import pathlib as pl
+import time
 
 from pyneuroml.pynml import read_neuroml2_file
-from pyneuroml.utils import extract_position_info
+from pyneuroml.utils import extract_position_info, get_files_generated_after
 
 from .. import BaseTestCase
 
@@ -46,3 +47,18 @@ def test_extract_position_info(self):
 
             for c in ["HL23PV", "HL23PYR", "HL23VIP", "HL23SST"]:
                 self.assertIn(c, cell_id_vs_cell.keys())
+
+    def test_get_files_generated_after(self):
+        """test get_files_generated_after method."""
+        # compare to epoch, should just list all files
+        files = get_files_generated_after(timestamp=0)
+        print(files)
+        current_files = list(pl.Path(".").glob("*"))
+        current_files = [f for f in current_files if f.is_file()]
+        self.assertEqual(len(files), len(current_files))
+
+        # no files
+        files = get_files_generated_after(timestamp=0, ignore_suffixes=[".py"])
+        print(files)
+        current_files = list(pl.Path(".").glob("*.hahah"))
+        self.assertEqual(len(files), len(current_files))